Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5580 334 8e-87 seq6222 152 5e-32 seq3468 98.7 1e-15 >seq5580 Length=7482 Score = 334 bits (370), Expect = 8e-87 Identities = 561/801 (70%), Gaps = 9/801 (1%) Strand=Plus/Plus Query 132549 CTAAAAGTCCGCATCCAAAGTAAAGG--TGTCGTCCTTGGCAAAC-ATCACGCCAAATTT 132605 ||| || ||||||||||| ||||| || | | | ||| | | |||||||| || Sbjct 5274 CTAGAAATCCGCATCCAATGTAAAAACTTGGCTTTCGCGGCTAGCCATCACGCCGCTCTT 5333 Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665 ||| ||||||||||| || |||||||| ||||| || || || || ||||||||| Sbjct 5334 TTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTC 5393 Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 |||||| || || ||||| | | ||||| ||||| | || ||||| | || Sbjct 5394 CATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAAGTTCGACCAAGAG 5453 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785 || ||| || |||||||| ||||| || ||| || || || | || |||| Sbjct 5454 CCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATGGC 5513 Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845 ||||| | || ||||| | || |||||| || | || || ||| || ||||| Sbjct 5514 TACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATTTG 5573 Query 132846 CCTAACGCGCGCCGCGCTCGG-CCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGT 132904 | ||||||| || ||| || |||| |||||||| ||| |||| | ||||||||| | Sbjct 5574 CGTAACGCGAGCGACGCCGGGTTTGTTG-ACCAAATGTTTGTACATAAGGCAAGCAAAAT 5632 Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964 |||||||||| |||||||| | |||||||| |||||| ||||| | |||||||| | Sbjct 5633 CGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCA 5692 Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024 || | || || ||||| || |||| ||| ||| ||| || || || | ||||||| Sbjct 5693 AACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGA 5752 Query 133025 CGGCCGCGAAAGCCACCAGGCGCTC-GCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083 |||| || || || | | ||||| || ||| | ||| ||| | |||||| Sbjct 5753 CGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCT-GCTGTGTTGTCAGAGATCCATTTA 5811 Query 133084 AGCGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACG 133142 | ||||| |||||||| |||||| || || || | |||||||| || |||| Sbjct 5812 AAGGCCCAATCGGCCTTCTTCTTT-ACACAAGGAAGGGTTTCGATAGCTCGGAACAGCAT 5870 Query 133143 GAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 ||||||| || | || || | || |||||||| | ||||||||||| || || Sbjct 5871 CTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAATG 5930 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 | ||| |||||||| || || |||||||| || || ||||| ||| ||||||||||| Sbjct 5931 AATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTTC 5990 Query 133263 TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 ||| || || ||||| |||| ||||| ||||| ||||| || |||||| || || || Sbjct 5991 TTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGAAAGC 6050 Query 133323 CAGCACGTGCTTGATGAAATG 133343 || ||||| ||| ||| || Sbjct 6051 CAAAACGTGGCTGACGAAGTG 6071 >seq6222 Length=12937 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || |||||||||||||| | || |||||| || | Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | |||| ||||||| |||||||| || |||||| |||| || Sbjct 4360 GACACCATTGAAAACG-TCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCA 4302 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||||||| |||| |||| || ||| | || ||||| Sbjct 4301 ACAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAA 4242 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || || ||||| || |||||| ||||||| Sbjct 4241 TATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGG 4194 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || || ||| | | Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | |||| || |||| |||||||| || |||||| | ||||| Sbjct 4588 GACACCATTGAAAACG-TCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCA 4530 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | ||| ||||| || ||||| |||| || ||| | || ||||| Sbjct 4529 ACAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAA 4470 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || || ||||| ||||||||| ||||||| Sbjct 4469 TATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGG 4422 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || ||||| ||||| ||| | || || ||| | || Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||||||| |||||||| || ||||| |||| || Sbjct 5044 GACACCATTGAAAACG-TCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCA 4986 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| |||||||| |||| |||| || ||| | |||||||| Sbjct 4985 ACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAA 4926 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || || || ||||| || |||||| ||||||| Sbjct 4925 CATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGG 4878 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| |||||||| || || ||||| | || ||||| | || Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | || ||||| || ||||| | || || Sbjct 4816 GACACTATTGAGAACG-TCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCA 4758 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| |||||||| |||| |||| || ||||| |||||||| Sbjct 4757 ACAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAA 4698 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||||||| | || || |||||||| || ||| | | ||||| Sbjct 4697 CATTCAAAAGGAATCTACACTCCATTTGGTCCTCCGTCTCCGTGGCGG 4650 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | |||||||||||||||||| | || || || | || Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | |||| ||||| | ||||| || || ||||| |||| || Sbjct 3904 GACACCATTGAAAACG-TCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCA 3846 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || || || |||| || | || ||| | |||||| || Sbjct 3845 GCAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAA 3786 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || |||||||| ||||| | | |||||| Sbjct 3785 TATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTCCGTGGCGGC 3737 Score = 109 bits (120), Expect = 5e-19 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 38234 CTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGT 38293 ||| | | |||||||||| ||||| || || || |||||||| || || ||| |||| || Sbjct 5342 CTTCACAGAAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGT 5283 Query 38294 CGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTC 38352 ||| | | || | | | | ||||| | |||| ||||| | |||||||| || || | Sbjct 5282 AGAGCCTTCGGATACCATTGAAAACG-TCAAAGCCAAAATTCAAGACAAAGAAGGTATCC 5224 Query 38353 CCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 38412 || | ||||| || || | |||| ||| ||||| || |||| || | || || | Sbjct 5223 CCCCTGACCAGCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGT 5164 Query 38413 ACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||||||| || || ||| | || ||||||||||| ||||| Sbjct 5163 CAGATTACAACATTCAGAAAGAATCCACCCTGCATTTGGTATTGCGT 5117 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| ||||| ||||| || ||||| | || ||||| | | Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| ||||| || || ||||| |||| || Sbjct 4132 GACACCATTGAGAACG-TCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCA 4074 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || ||||| ||| | || || | ||||| | ||||||||| Sbjct 4073 ACAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAA 4014 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| | || || ||| | || |||||| || | || || Sbjct 4013 CATCCAGAAAGAATCTACTCTTCATCTAGTCCTGCGTCTGCGTGGTGG 3966 >seq3468 Length=50068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || ||||||||| | || |||||| | | Sbjct 38278 ATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTCA 38337 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | ||||||| ||||| || ||||| ||| |||| ||| Sbjct 38338 GACACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGATCAA 38397 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| |||||||| |||| |||| | || || ||||||||| Sbjct 38398 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGACGGCAGGACTCTTTCTGACTACAAC 38457 Query 38424 ATCCA-AAAGG 38433 ||||| ||||| Sbjct 38458 ATCCAGAAAGG 38468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499793737791360