Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 131 7e-25
seq3468 100 1e-15
>seq6222
Length=12937
Score = 131 bits (144), Expect = 7e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| ||||| |||| || ||||| || || | || |||||| | ||
Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||||| | ||| ||||||||||| |||||||| |||||||| |||||
Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||||| || ||| | || || ||| | |||||||| | || ||| | || ||||||
Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261
|| | ||||| |||| || || || || ||
Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTT 3753
Score = 129 bits (142), Expect = 2e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| ||||| || || || || || || ||| | || || ||| | ||
Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||| | ||| |||||||||||||| ||||| |||||||||||||||
Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 4757
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||||||||||||||| | || |||||| | ||||| || | || || | || || ||
Sbjct 4756 CAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAAC 4697
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| | ||||| || || ||
Sbjct 4696 ATTCAAAAGGAATCTACACTCCATTTGGT 4668
Score = 127 bits (140), Expect = 8e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || ||||| || || ||||| || || |||||||| || || || || | ||
Sbjct 5333 AATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTC 5274
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|||| ||||||| | ||| ||||||||||| || ||||| || || ||||| ||
Sbjct 5273 GGATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCA 5214
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
||||||||||||||| | || || ||| | |||||||| | || ||| | ||||| ||
Sbjct 5213 GCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACAA 5154
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261
||| | || || | || || || || |||||
Sbjct 5153 CATTCAGAAAGAATCCACCCTGCATTTGGTATT 5121
Score = 120 bits (132), Expect = 1e-21
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| ||||| ||||||| || || ||||| | || ||||| | ||
Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||||| | || ||||| ||||| || ||||| |||||||| ||||||
Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||||| |||||| | || |||||| | ||||| || | || ||| | || || ||
Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | || || | || |||||||| ||
Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGT 4896
Score = 111 bits (122), Expect = 6e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || ||||| || ||||| || || || ||| | || || ||| ||||
Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | || ||||| ||||| |||||||| |||||||| ||||||
Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAA 4073
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||||| ||||| | || || || | |||||||| | |||||| | || || ||
Sbjct 4072 CAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAAC 4013
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | || || | || ||||| ||||
Sbjct 4012 ATCCAGAAAGAATCTACTCTTCATCTAGT 3984
Score = 111 bits (122), Expect = 6e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || || || ||||| || ||| | || || || | |||
Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||||| | ||| ||||| ||||| || ||||| ||||| || ||||||
Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||||| ||||| ||| | || ||||| | ||||| || | || || | ||||| |||
Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAAT 4241
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | || || | || |||||||| ||
Sbjct 4240 ATCCAAAAAGAATCCACCCTTCACTTGGT 4212
>seq3468
Length=50068
Score = 100 bits (110), Expect = 1e-15
Identities = 121/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || |||| ||||| || || || ||||| || || | ||
Sbjct 38278 ATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTCA 38337
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || ||| | |||| ||||| ||||| ||||||||||| || || ||||||
Sbjct 38338 GACACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGATCAA 38397
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214
|||||||| || ||| | || |||||| | ||||| || || |||
Sbjct 38398 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGACGGCAGGACT 38442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1974183644041932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |