Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1628 295 5e-74 seq7016 170 1e-36 seq7774 91.5 1e-12 seq985 87.8 1e-11 >seq1628 Length=19996 Score = 295 bits (326), Expect = 5e-74 Identities = 956/1462 (65%), Gaps = 28/1462 (2%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || || ||||| ||||| || | ||| || ||||||||||| ||||| || |||| | Sbjct 19001 ACGTTCAGGATACCGTTGGCGTCGATATCGAAGGTGACTTCAATCTGAGGAACTCCTCGC 18942 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 ||||||| || || || | | || | |||| || || ||||| || | Sbjct 18941 GGAGCAGGCGGAATACCGGTGAGTTCGAACTTGCCCAACAAGTTGTTGTCTTTTGTCATG 18882 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 ||||| || ||| | | ||| || || | | || || || | ||| ||||| Sbjct 18881 GCGCGTTCCCCTTCGTATACTTGAATCAAGACGCCGGGCTGGTTGTCGGCATACGTTGTG 18822 Query 517445 AATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 || | ||||| | | || || || || || || | | ||| | |||||||| Sbjct 18821 AA-AGTCTGGGTCTGCTTGGTCGGGATGGTGGTATTACGCTTAATCAAGGGGGTCATAAC 18763 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563 ||| || || || || | ||| | |||||||| | ||| || | |||| | || ||| Sbjct 18762 ACCGCCAGCGGTCTCGATACCCAACGAAAGAGGGGCGACGTCGAGCAGGAGCAAATCTTG 18703 Query 517564 AAGTTTTTC--ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 | ||| || || | | ||| ||| || ||||| | || ||||| || ||| Sbjct 18702 GACCGCTTCGGATTTGTCTC-CGTGCAA-AATGGCGGCTTGGACGGCGGCACCGTAAGCA 18645 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAG 517680 |||||||| || || || | | | || |||| ||| || |||||||||| ||| || Sbjct 18644 ACAGCTTCGTCCGGGTTGATGGACTTGTTCAGTTCTTTGCCGTTGAAAAAATCTTGCAAC 18585 Query 517681 AAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 517739 | ||| ||| || || || ||||| | || || || || || |||||||| | | | Sbjct 18584 A-GTT-TCTGCACTTTCGGGATACGCGTGGAGCCACCGACCAAAACAATTTCGTTGATCG 18527 Query 517740 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAA 517799 | ||| || || || | || || |||| ||||| || || | || | | Sbjct 18526 AGGCTTTGTCAAGCTTGGCGTCGCGCAAGGCTTTCTCAACAGGATCCATGGTGGCGCGGA 18467 Query 517800 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTGACATTATAATCAA 517856 | | ||| | ||||| |||||||| || | |||| |||| | | | || | Sbjct 18466 AGAGGTCGGCGCAAAGCTCTTCGAAACGGGCGCGGGTAATCGAAGTG---TAAAAGTCGA 18410 Query 517857 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 517916 | |||||||||| || || | ||| | || || ||| || || || || || | || | Sbjct 18409 TACCTTCGAACAGCGAGTCGATTTCGACCGAAGCTTGGGTGGAGGACGACAGAGTCCGCT 18350 Query 517917 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT--CAAATC 517974 | || ||||| || || || | || | ||| | || | ||||| | ||| || Sbjct 18349 TGGCCCGTTCGCAAGCCGTACGGAGACGTCGCAGAGCGCGAG--GATTGGTGGACAAGTC 18292 Query 517975 TGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 518034 | | || || || | ||||| |||| || | | || | || || |||||||| Sbjct 18291 TTTCTTGTACTTGCGTTTGAATTCTTGGACGAAGTGATTGACCATGCGGTTGTCAAAATC 18232 Query 518035 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA- 518093 |||||| ||||| | ||||| || | || | | | |||| ||| | || ||||||| Sbjct 18231 TTCACCACCCAAGTGAGTATCACCCGCGGTGGATTTGACTTCGAAGATGCCTTCTTCAAT 18172 Query 518094 -GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | || || ||| |||||| |||||||| |||| ||||| || || | ||| | Sbjct 18171 GGTGAGAATGGAG--ACATCAAAAGTTCCACCGCCCAAGTCAAAGATGAGGATGTTCCGT 18114 Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212 || | || || || | |||||| || | ||| ||||| || || || || || Sbjct 18113 TCACCACCCACTTTCTTGTCCAAACCATAGGCGATAGCTGCAGCGGTAGGCTCGTTGATG 18054 Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272 || | |||||| || | || || || | || || || || |||||||| | || ||| Sbjct 18053 ATACGCAAAACGTTCAAGCCCGCGATGGTACCAGCGTCCTTGGTGGCTTGACGCTGGGAA 17994 Query 518273 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCG 518332 ||||| || || || || || || | |||||||| | |||| | || | ||||| Sbjct 17993 TCGTTGAAGTAGGCGGGGACCGTGACGACGGCATCGGAGACTTTGCTGCCCAAGTAAGCT 17934 Query 518333 CTTGCCGTTTGTTTCAT-TTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG 518391 |||||||| | ||| ||||| | || ||| || || |||| ||| |||||| | | Sbjct 17933 TCTGCCGTTTCTCGCATCTTTACC-AGAACCATGGACGAGATTTCTTC-GGGGAAGAAGG 17876 Query 518392 CTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 518450 ||| | | ||| | || |||| || | ||||| || | | || || |||| Sbjct 17875 CTTTGGTCTCACCCTTGTACTCGACTTGAATCTTGGGTTTGGTATTATCGTTGATGACTT 17816 Query 518451 TAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 518510 | || ||||||| |||||||| | ||| || | ||||| || | || || | Sbjct 17815 TGAACGGCCAGTGCTTCATATCAGCTTGCACGGTGGCGTCATCGAATCGACGGCCGATAA 17756 Query 518511 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCAT 518570 ||||| |||||||| | || |||| || || || || |||||| ||| || |||| Sbjct 17755 GACGTTTCGCATCAAAGACGGTGTTGGAAGGGTTCATCGCGACTTGATTTTTTGCAGCAT 17696 Query 518571 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 518630 | || || ||| | || || || ||||| | || || |||||||| || || ||||| | Sbjct 17695 CGCCGATGAGACGCTCCGTGTCCGTAAAGGCGACGTAGGATGGAGTGGTACGGTTACCCT 17636 Query 518631 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 518690 | || || ||||| ||||| ||||| || | || ||||||| || ||| | || | Sbjct 17635 GGTCGTTGGCAATGATTTCTACTTTGCCGTGCTGGAATACACCCACGCAAGAGTAGGTGG 17576 Query 518691 TTCCTAAATCAATACCAATAGC 518712 | || || ||||||||||| || Sbjct 17575 TACCCAAGTCAATACCAATTGC 17554 >seq7016 Length=12204 Score = 170 bits (188), Expect = 1e-36 Identities = 371/551 (67%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||| || |||| ||| ||||| || ||||| || || || | || || Sbjct 5891 TTTTTGTCCAAACCGTAGGCAATAGCGGCAGCTGTGGGTTCGTTGATGATACGCAGGACG 5832 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | ||||| || | || || || || || ||||| | || |||||||| || || Sbjct 5831 TTCAAGCCAGCGATGGTACCGGCGTCCTTTGTAGCTTGACGCTGGGAATCGTTGAAGTAA 5772 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || | ||||| | || || || || | |||||| || |||| Sbjct 5771 GCGGGGACTGTGACGACGGCGTTGGTGACAGTTTGTCCCAAATAAGCTTCAGCAGTTTCC 5712 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG--GAATATTGCTTGGATTCAT 518402 |||||||| | | | ||| || |||| || ||| ||| ||| || |||| ||| Sbjct 5711 TTCATTTTGGTGAGGACCATGGAGGAAACTTCTTCAGGGAAGAAGGTT--TTGGTTTCTC 5654 Query 518403 T-TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAG 518461 |||| || |||| | | || || ||| | | || |||| || |||||| Sbjct 5653 CCTTGA-ATTCGACTTGGATTTTAGGCTTGCCGCCATCGCTGATGACTTCGAAGGGCCAG 5595 Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521 | ||||| || || || || || ||| | ||| | ||| || | || || ||| Sbjct 5594 TGCTTCATGTCGGACTGGACGGTTGCGTCCTCGAAACGACGACCGATGAGACGCTTAGCA 5535 Query 518522 TCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 518581 ||||| | || ||||| || || || || | || | ||||| || || || |||||| Sbjct 5534 TCAAAGACGGTGTTGGTCGGGTTCATGGCGACCTGGTTCTTGGCGGCGTCGCCGATCAGA 5475 Query 518582 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 | || || || || || | || || || || || ||||| |||||||| || || ||| Sbjct 5474 CGCTCGGTGTCGGTGAAAGCCACGTAAGAAGGTGTCGTGCGGTTACCTTGGTCGTTGGCA 5415 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701 |||||||| ||||| |||| ||| ||||||| ||||| | || || || |||||| Sbjct 5414 ATAATTTCCACTTTGCCATGTTGGAATACACCCACACAGGAGTAGGTGGTACCCAAATCA 5355 Query 518702 ATACCAATAGC 518712 || |||||||| Sbjct 5354 ATGCCAATAGC 5344 >seq7774 Length=19145 Score = 91.5 bits (100), Expect = 1e-12 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 668854 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACG 668913 ||| |||||||| |||||| ||||||| ||||||||||||||||| || | || || || Sbjct 13354 AGGCAAAGAAGGGCGTATTCGAGGAAACTTGATGGGAAAACGTGTGGACTTCTCCGCTCG 13413 Query 668914 TACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTAT 668973 ||| || |||||| ||||||| ||| | | | | | || || || || | || Sbjct 13414 TACTGTCATTACTCCTGATCCAAATTTACGTATTGACCAGGTCGGCGTACCCCGCTCCAT 13473 Query 668974 TGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 669021 |||| | || | ||||| |||||||| ||| | ||||||||| Sbjct 13474 TGCTCAGAACTTAACTTTCCCTGAAATTGTCACACCATTTAATATTGA 13521 >seq985 Length=45870 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTT 635497 || ||||| | ||| |||| || ||||| ||||||||||| || ||| | ||||| | Sbjct 11061 AATTGTACATTGATTCTGACGGAAGGAGACTCAGCTAAAACTTTGGCTGTCTCTGGATTG 11120 Query 635498 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 635557 || | ||| ||||| | |||||||| || || ||| ||||||||||| | ||||| Sbjct 11121 GGAGTCGTGGGACGAGATAAATATGGAGTATTTCCCCTTCGAGGAAAACTTCTTAATGTG 11180 Query 635558 AGGGATGCTAGTCCTAAA 635575 | || |||| | ||||| Sbjct 11181 CGCGAAGCTACTACTAAA 11198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777813789308074