Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 118 1e-21
seq985 86.0 8e-12
>seq5580
Length=7482
Score = 118 bits (130), Expect = 1e-21
Identities = 175/244 (72%), Gaps = 8/244 (3%)
Strand=Plus/Minus
Query 102074 TGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGC 102133
|| |||||| || ||| || ||| ||| |||| |||| ||| | | ||||| ||
Sbjct 5883 TGATGAGAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAAGAAGAAGGC 5824
Query 102134 GGATTGGGCTATGAAGTGGTT---TGATA-CAAAGTCGCGTTCCTTTGCTGAGCGACTCT 102189
|||||||| | || ||| | ||| | || || | ||| ||||||||||| ||
Sbjct 5823 CGATTGGGCCTTTAAATGGATCTCTGACAACACAGCAG-GTT---TTGCTGAGCGAGTCA 5768
Query 102190 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 102249
|||| ||||| || |||||||| || |||||||| || || | | |||| ||||
Sbjct 5767 TCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGC 5708
Query 102250 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 102309
| |||||| ||||| | ||||| ||||| || ||||||||||| || || |||||||
Sbjct 5707 TGAAGAAGAGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACG 5648
Query 102310 AGGG 102313
||||
Sbjct 5647 AGGG 5644
>seq985
Length=45870
Score = 86.0 bits (94), Expect = 8e-12
Identities = 208/314 (66%), Gaps = 6/314 (2%)
Strand=Plus/Minus
Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900
|| ||||| ||||| |||| |||||| || || |||||||| | | || ||||| |
Sbjct 12884 CCGGTACCAATACCATCTGCACCGTTGACAAGGACCATGGGTATGATGGGTATGTACCAA 12825
Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 175960
|| || ||||| || |||||| || |||| ||| | | |||||| | |||
Sbjct 12824 TCAGGTTCAATCTTAAGATTGTCGTCACGCAGGTAGTGGAGTAAAGCATCATCGTTAGGA 12765
Query 175961 TCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACGCA 176020
| || ||| || | || | | || ||||| ||||| | || | || |||
Sbjct 12764 TGGAAAATCAAACGCGTGAGTTCGGACAATTTGGTAAAAATATAACGCG---GCGATGCA 12708
Query 176021 ---TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077
|| || |||||| ||||| || |||||||||||| ||| || | ||||||
Sbjct 12707 GCGTCTTTGCCACCCTGCAGACGAGTGCCAAACTGACCAATTGGCAGCAGCAAGTTGATA 12648
Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137
||||| || |||| ||| | |||||| || | ||| || || | ||| |||||
Sbjct 12647 TTGTTCGAGCCCACAAAGTTCTGCGCCAAGTTAATAATGGTCCCCATCAAGGAGGCTTCA 12588
Query 176138 CCGTGGTGGTACGC 176151
||||| || || ||
Sbjct 12587 CCGTGATGATAAGC 12574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620271962612880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |