Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7813 96.9 4e-15 seq985 84.2 3e-11 >seq7813 Length=5936 Score = 96.9 bits (106), Expect = 4e-15 Identities = 188/275 (68%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 110170 ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATT 110229 || |||||||||||| ||| |||| | || | |||| || || || |||| | Sbjct 1756 ACTGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGACTTTGGTGACT 1815 Query 110230 TCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT--ATTGACATATTTGGGGAGAG 110287 || | ||| ||| | | || |||| || ||| ||| | ||||||| |||| Sbjct 1816 TCTTTGAGCTTGACAAAGTCATACGTCTTA-TCTTCTTTCACGAACATATTC----AGAG 1870 Query 110288 CAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCG 110347 |||| || || | |||||| |||| | ||||| || ||||| | |||||||| Sbjct 1871 CAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATTTCCG 1930 Query 110348 TACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATG 110407 |||||| || || | || ||| |||| ||| | |||||| ||||| ||| || | Sbjct 1931 TACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTACAGG 1990 Query 110408 CATCCTTATAGAGCATGTATGGGGTACCAGTTTCC 110442 ||||||| ||||| ||||| || || || |||||| Sbjct 1991 CATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCC 2025 >seq985 Length=45870 Score = 84.2 bits (92), Expect = 3e-11 Identities = 226/346 (65%), Gaps = 0/346 (0%) Strand=Plus/Minus Query 167359 CCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAAG 167418 || ||||||||||| || | |||||| || | ||||| |||| | || ||||| | Sbjct 12884 CCGGTACCAATACCATCTGCACCGTTGACAAGGACCATGGGTATGATGGGTATGTACCAA 12825 Query 167419 TCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGGA 167478 || |||||||| | || || ||| || ||||| ||| | |||||||| || ||| Sbjct 12824 TCAGGTTCAATCTTAAGATTGTCGTCACGCAGGTAGTGGAGTAAAGCATCATCGTTAGGA 12765 Query 167479 TCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACGCA 167538 | ||| | | || | | || | || ||||| || || | || | | || Sbjct 12764 TGGAAAATCAAACGCGTGAGTTCGGACAATTTGGTAAAAATATAACGCGGCGATGCAGCG 12705 Query 167539 TCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTTA 167598 || ||||||||| || || || ||||| |||||| |||| || | ||||| || Sbjct 12704 TCTTTGCCACCCTGCAGACGAGTGCCAAACTGACCAATTGGCAGCAGCAAGTTGATATTG 12645 Query 167599 TTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAACTTCGCCG 167658 ||||| ||| | | | | ||||| || | || || | | ||| |||| ||| Sbjct 12644 TTCGAGCCCACAAAGTTCTGCGCCAAGTTAATAATGGTCCCCATCAAGGAGGCTTCACCG 12585 Query 167659 TGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAA 167704 || || ||||| | |||||| || | | |||||||| |||| Sbjct 12584 TGATGATAAGCTGAATGTTCAGCTACCGAACCAGCCAACTGGGCAA 12539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588529637176200