Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq4723 158 4e-34 >seq4723 Length=43540 Score = 158 bits (174), Expect = 4e-34 Identities = 209/290 (72%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 33972 TGGTCGATAGCATAGAGCTTCCCATCAACTAtttttttATTGTTGGTATCTACTGCAACA 34031 ||| |||| ||||| |||||||||||||||||| ||| || || || ||||| ||||| Sbjct 40382 TGGGCGATCGCATAAAGCTTCCCATCAACTATTCGTTTGTTATTCGTGTCTACCGCAACG 40323 Query 34032 GTTGTACCGTCAGGGATAATAGGCTCCATGCTATTCCCGGTGGCAGGAAAGCATAGCACC 34091 || || |||||||| || | || |||||||||| ||||| || || || || || || Sbjct 40322 GTGGTTCCGTCAGGTATCACCGGTTCCATGCTATCACCGGTAGCGGGGAAACAGAGGACT 40263 Query 34092 CCTTCGCCGCTTGAATTTGCACCAACTCTGCGAAGAGTGGCCTTTGAAAATCTCAACATA 34151 || || ||||||||| || | || || || |||||||| || ||||| || Sbjct 40262 CCAGAACCATCACTATTTGCACCGACGCGTCGCAGGGTAGCCTTTGAGAACCTCAATTTA 40203 Query 34152 AACCCATTATGATCTTCGCTGCTAAATGTCCCATCACCACAAGCGAACTCGATATCCTTC 34211 || || || ||||||||||| | ||||| || || || |||||||||||||| Sbjct 40202 AATCCGTTGTGATCTTCGCTATGGACACGGCCATCCCCGCACGCAAACTCGATATCCTTA 40143 Query 34212 AAAAAATGAACCTCTACTTCATCGTCGTCTAGAGGCGTTTCATTATCCCA 34261 | || | || || || ||||| || ||| ||||| | |||||||| Sbjct 40142 AGGAACGGCACTTCGACCTCATCATCTGGTAGGGGCGTGTTCTTATCCCA 40093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151062361365618