Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6222 167 5e-36 >seq6222 Length=12937 Score = 167 bits (184), Expect = 5e-36 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCTCCCAT 194986 || ||| | |||||| ||||| |||||||| ||||||||||| | |||| || | || | Sbjct 4436 CAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAG-GTACGACCGT 4494 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| || ||||| || |||||||| || ||||||||||| || |||||||||||||||| Sbjct 4495 CTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGT 4554 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 |||| || || |||||||| ||||||||||| || || ||||| | || | | Sbjct 4555 CTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGG 4614 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || |||||||| || ||||| | |||||| Sbjct 4615 TTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 161 bits (178), Expect = 2e-34 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| ||||| |||||||| || ||||| || | |||| || | || |||| Sbjct 4895 AACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAG-GTACGGCCGTCTT 4953 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | || || || ||||| || | |||||||| || |||||||||||||||||||||| Sbjct 4954 CCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTT 5013 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | ||||| ||||||||| ||||||||||| || || ||||| | ||||| |||| Sbjct 5014 GGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCT 5073 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| ||||| ||||| | |||||| Sbjct 5074 TGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || ||||| || || ||||| |||| | ||| | |||||||| Sbjct 3984 ACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTCT 4043 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || || || | |||||||| || |||||||||||||| |||||||| Sbjct 4044 AACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCTTGG 4103 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||||||||||||||||||| || ||| ||||| | || | |||||| Sbjct 4104 ATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTCTTG 4163 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| || | ||||| Sbjct 4164 CCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 156 bits (172), Expect = 9e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | || || ||||| ||||| ||||| |||||||| | | || | Sbjct 5114 GAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACG 5173 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||| || ||||| || | ||||| ||||| || || || ||||| Sbjct 5174 ACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTC 5233 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||||||| |||||||| |||||||| |||||| || ||||| ||||| Sbjct 5234 TTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGT 5293 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATG 195145 || ||||| || |||| || || ||||| | |||||||| || Sbjct 5294 AATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTTCTG 5337 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTC 194980 ||| | ||| || | || ||||| || || || || ||||| || |||| |||| || | Sbjct 3746 GAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAG-GTAC 3804 Query 194981 TCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 |||||||| | |||||||| |||||||| | ||||| || || |||||||| |||| Sbjct 3805 GACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTT 3864 Query 195041 CTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGG 195100 | |||||||||||||| |||||||| ||||||||||| || ||| ||||| | || Sbjct 3865 CCTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGG 3924 Query 195101 TAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | | || || || ||||| ||||| ||||| | |||||| Sbjct 3925 TGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || |||||||| ||||| || | || || | || ||||| | || Sbjct 4674 TGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCCAATTGT 4733 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || | |||||||| || ||||||||||||||||| ||||||||||| Sbjct 4734 TTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAATTTTG 4793 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||||||||| ||||| ||| ||| ||||| | || | ||||||||| || Sbjct 4794 GCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTTCCCGTG 4853 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| ||||| | |||||| Sbjct 4854 AGAGTTTTGACGAAAATTTGCAT 4876 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| ||||| |||||||| ||||||||||| | | || | || ||||| Sbjct 4211 AACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTC 4270 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| || || |||||||| | ||||||||| || || |||||||||||||||||||| Sbjct 4271 CAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTG 4330 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| |||||||| ||||||||||| || || ||||| | || | || || Sbjct 4331 GATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTT 4390 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 4391 GCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108619744638443