Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7813 89.7 6e-13 >seq7813 Length=5936 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 46973 tttttCCACAGTAAACTTAATTG--GATTACTCGCTGATTTTGTTCGTAAATAATACATA 47030 ||| ||||| || || ||||| | ||| | || | ||| || || | || ||||| Sbjct 688 TTTATCCACTGTGAATTTAATCGCTGATGCCGCG--GGTTTGGTGCGAAGGTAGTACATG 745 Query 47031 CCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTA 47090 ||||| || || |||| |||| |||||||||| |||||||| |||| | Sbjct 746 CCAGTTTTCAAGCCTAGCTTCCACGAGAAGAAATGCATGGACGTTAATTTGCCATAATTG 805 Query 47091 GGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCT 47150 || |||| || |||| ||||| || || || || ||||| ||||| ||||| || || Sbjct 806 GGCTCTGCTATGTGAACGTTAAGTGACTGGCTTTGGTCAATGAATGCTCCTCTGTCGGCC 865 Query 47151 GCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 | ||| | | | | || ||| | ||||||||||| ||||| || | ||| ||| Sbjct 866 GACATTTTGATGACTATCCGTTGGGAAATCTCCCATACGGTTTTGTACAGCGCTTTGATG 925 Query 47211 TCTTCTGGGA 47220 || || |||| Sbjct 926 TCGTCAGGGA 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561682798819560