Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7016 159 3e-33 seq1628 154 1e-31 seq6222 125 6e-23 seq985 86.0 5e-11 >seq7016 Length=12204 Score = 159 bits (176), Expect = 3e-33 Identities = 362/540 (67%), Gaps = 6/540 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || ||||| || ||||| || ||||| ||||| | ||| |||| || Sbjct 5343 AGCTATTGGCATTGATTTGGGTACCACCTACTCCTGTGTGGGTGTATTCCAACATGGCAA 5402 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| |||||||||||||| || ||||||||| | || || || ||||| || ||||||| Sbjct 5403 AGTGGAAATTATTGCCAACGACCAAGGTAACCGCACGACACCTTCTTACGTGGCTTTCAC 5462 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || | | | | || || || || || | || | | | || || ||||| Sbjct 5463 CGACACCGAGCGTCTGATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCGACCAA 5522 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | ||||||||||| ||| | || || | |||| | || | || || ||| | Sbjct 5523 CACCGTCTTTGATGCTAAGCGTCTCATCGGTCGTCGTTTCGAGGACGCAACCGTCCAGTC 5582 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289 || |||||||| ||||| ||| || | | | | | || || ||| | || ||| Sbjct 5583 CGACATGAAGCACTGGCCCTTCGAAGTCATCAGCGATGGCGGCAAGCCTAAAATCCAAGT 5642 Query 550290 CTACT--CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | | | || | | |||| | ||| || ||| || |||| || ||||| | Sbjct 5643 CGAATTCAAGGGAGAAAC--CAAAACCTTCTTC-CCTGAAGAAGTTTCCTCCATGGTCCT 5699 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||||||| |||| || |||| | | || ||| || || | || || | Sbjct 5700 CACCAAAATGAAGGAAACTGCTGAAGCTTATTTGGGACAAACTGTCACCAACGCCGTCGT 5759 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || || || || || || || || || ||||||||||| || || || || || Sbjct 5760 CACAGTCCCCGCTTACTTCAACGATTCCCAGCGTCAAGCTACAAAGGACGCCGGTACCAT 5819 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| | || || || ||||| ||||| ||||| || ||||| || |||| || || Sbjct 5820 CGCTGGCTTGAACGTCCTGCGTATCATCAACGAACCCACAGCTGCCGCTATTGCCTACGG 5879 >seq1628 Length=19996 Score = 154 bits (170), Expect = 1e-31 Identities = 362/540 (67%), Gaps = 6/540 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||| || || || ||||| || ||| || ||||| | || | || || Sbjct 17553 AGCAATTGGTATTGACTTGGGTACCACCTACTCTTGCGTGGGTGTATTCCAGCACGGCAA 17612 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| ||||| |||||||| || || |||||| | || |||||||| || || | || || Sbjct 17613 AGTAGAAATCATTGCCAACGACCAGGGTAACCGTACCACTCCATCCTACGTCGCCTTTAC 17672 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 ||| || || | | | | || ||||| |||||| |||||| | | || ||| |||| Sbjct 17673 GGACACGGAGCGTCTCATCGGCGATGCTGCAAAAAATCAAGTCGCGATGAACCCTTCCAA 17732 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | |||||||| |||||| | || || | | || |||| | || || || || Sbjct 17733 CACCGTCTTTGATGCGAAACGTCTTATCGGCCGTCGATTCGATGACGCCACCGTGCAAGC 17792 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289 ||||||||||| ||||| ||| || | | || | | | ||||| | ||| ||| Sbjct 17793 TGATATGAAGCACTGGCCGTTCAAAGTCATCAACGATAATACCAAACCCAAGATTCAAGT 17852 Query 550290 CTACTCATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | | |||| | | ||| || | || ||| |||| || || |||||| | Sbjct 17853 CGAGT--ACAAGGGTGAGACCAAAGCCTTCTTCCCCGAAGAAATCTCGTCCATGGTTCTG 17910 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAAT 550407 | || ||| | |||| | ||| || |||| || |||| | ||||| || | Sbjct 17911 GTAAAGATGCGAGAAAC-GGCAGAAGCTTACTTGGGCAGCAAAGTCTCCGATGCCGTCGT 17969 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || || || || || || || || || |||||||| || || || ||||| || Sbjct 17970 CACGGTCCCCGCCTACTTCAACGATTCCCAGCGTCAAGCCACCAAGGACGCTGGTACCAT 18029 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || | || ||| | ||||| ||||| || ||||| ||||| || | || ||||| Sbjct 18030 CGCGGGCTTGAACGTTTTGCGTATCATCAACGAGCCTACCGCTGCAGCTATCGCCTATGG 18089 Score = 86.0 bits (94), Expect = 5e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| || ||||| || || |||||||| || ||||||||||| ||| Sbjct 18925 GGTATTCCGCCTGCTCCGCGAGGAGTTCCTCAGATTGAAGTCACCTTCGATATCGACGCC 18984 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAAATCTAGCAACAAG 552611 || || || |||| || | ||||| || || |||| | |||| Sbjct 18985 AACGGTATCCTGAACGTCTCGGCTTGCGACAAGTCTACCGGCAAG 19029 >seq6222 Length=12937 Score = 125 bits (138), Expect = 6e-23 Identities = 163/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || | ||| || ||| ||| || ||| ||||| |||| || || | Sbjct 4658 GAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACG 4717 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| | |||||| ||||| ||||| | | ||| |||||||||||||| ||||| Sbjct 4718 ACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTC 4777 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGA 563433 ||||||||||||||| ||| || |||||| || || | || | || ||| | | Sbjct 4778 TTTATCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCG-AC-TTCCAAA 4835 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || || || |||||||| ||||||||||||||| Sbjct 4836 GTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCATA 4877 Score = 102 bits (112), Expect = 7e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| | ||| | ||| ||||| |||||| ||| |||||||| | | || | Sbjct 5114 GAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACG 5173 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| | ||| || || || ||||| | | |||||| ||||| || || ||||| Sbjct 5174 ACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTC 5233 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 ||| ||||||||||| ||| || ||||| ||||| | | ||| |||||| | Sbjct 5234 TTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTAC-TTCGAGGG 5292 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| ||| || || || || || || ||||| |||||||| Sbjct 5293 TAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 Score = 98.7 bits (108), Expect = 8e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| |||||| ||||||||||||| || || | ||||| | Sbjct 4214 CAAG-TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCA 4272 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 ||||| || || || || | || ||| ||||| || ||||| |||||||| ||||| | Sbjct 4273 ACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGA 4332 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446 |||| ||| || ||||| || |||| | | ||| | ||| | ||||| | Sbjct 4333 TTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGC 4392 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | |||||||| || |||||||| |||||| Sbjct 4393 CGGTAAGAGTCTTCACGAAAATCTGCATA 4421 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| ||| |||||| || ||||| || | | ||| | Sbjct 3975 AGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGA 4034 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | || || ||||||||||| | | ||| ||||| |||||||| ||||| Sbjct 4035 CCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCC 4094 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || ||||| ||||| || || |||||| || || | || || ||| | ||| Sbjct 4095 TTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGAC-TTCCAAAGT 4153 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || ||||| || ||||| || ||||| |||||| Sbjct 4154 GATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCATA 4193 Score = 89.7 bits (98), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| |||||| ||||||||||||| | || | ||||| | Sbjct 4442 CAAG-TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCTTCCA 4500 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| || ||||| || || || | ||| || ||||| ||||| |||||||| ||||| | Sbjct 4501 GTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGA 4560 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446 | || ||| || ||||| || |||| | | ||| | ||| | ||||| | Sbjct 4561 TCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTTTTGC 4620 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || | ||| || ||||| ||||||||| Sbjct 4621 CGGTCAAAGTCTTCACGAAGATTTGCATA 4649 >seq985 Length=45870 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429290 CGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAACA 429349 || ||||| | ||||||| ||| |||||||| ||||| | |||||| || | || Sbjct 11182 CGCACATTAAGAAGTTTTCCTCGAAGGGGAAATACTCCATATTTATCTCGTCCCACGACT 11123 Query 429350 TTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACAT 429409 | |||||| | || |||||||||||||| ||||||||||||| ||| | |||||| Sbjct 11122 CCCAATCCAGAGACAGCCAAAGTTTTAGCTGAGTCTCCTTCCGTCAGAATCAATGTACAA 11063 Query 429410 TT 429411 || Sbjct 11062 TT 11061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026089665043210