Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq4723 747 0.0 >seq4723 Length=43540 Score = 747 bits (828), Expect = 0.0 Identities = 569/672 (85%), Gaps = 0/672 (0%) Strand=Plus/Minus Query 29152 TCATGCGGCCTCCGTTTTGATCACGTCGATCGCGCATCCTGGCAGCAACTGAACCGCCGA 29211 |||||| ||||||||| | || || || ||||| || |||||||| | |||||| | Sbjct 3530 TCATGCCATCTCCGTTTTTAAAACTTCAATTGCGCAACCGGGCAGCAATTCAACCGCGGC 3471 Query 29212 CGTCGGGCACTGGTTGCCCCAATGATCCCACCCCGGCGCACCGCAACGACTGAACAACTC 29271 || | |||||| || ||||| || | ||| || ||||| | | || ||||||||||| Sbjct 3470 GGTGGTGCACTGATTTCCCCAGTGGTGCCAGCCTGGCGCCGCACTGCGGCTGAACAACTC 3411 Query 29272 GATGCGCGGTACGTCGCCGTAGAGCAACTCAAGACGGTGGCGAACCTCCCACGGCTTTTC 29331 ||||| || || || ||||| |||| || || ||||| ||||| |||||||||||||| Sbjct 3410 AATGCGTGGCACATCACCGTAAAGCAGTTCTAGTCGGTGACGAACTTCCCACGGCTTTTC 3351 Query 29332 ACTGTGGGCACCGAGCGGGCTGTAAACCACCTGCTTAATCCCGGCGTGCTGTCGCTCAAG 29391 || || || ||||| |||||||| || ||||||||||| ||||||| | | || || || Sbjct 3350 GCTATGCGCGCCGAGAGGGCTGTAGACAACCTGCTTAATTCCGGCGTTCAGGCGTTCCAG 3291 Query 29392 CCCAGCGCCGCGGGTGGCAATCAGCAGGTCTTCGGTATTTGCACGGGTGTGGTTGCCGCC 29451 || | |||||||||||||||||||||||| || ||||| || ||||||||||||||||| Sbjct 3290 GCCGGTGCCGCGGGTGGCAATCAGCAGGTCCTCTGTATTGGCCCGGGTGTGGTTGCCGCC 3231 Query 29452 GTTCATGCGCGTCTCGGCGTTAAGCAGGTCGAGGAAGTCGTAAAAGTCGGTGATTTCACC 29511 |||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||| Sbjct 3230 GTTCATGCGCGTCTCGGCGTTAAGTAGATCGAGGAAGTCATAAAAGTCCGTGATTTCACC 3171 Query 29512 CTCGGCCAGCGCCTTGTTGATGCGCATCTCGGCGTTCTGATTAAGCTTCACCCAGGTAAA 29571 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 3170 CTCGGCCAGCGCCTTGTTGATGCGCAGTTCGGCGTTCTGATTCAGCTTCACCCAGGTAAA 3111 Query 29572 GCCCTTCATCGTGCGAACGGTAAAGCCCCAGGCCTCGGCAAGTTCGATAGCCTCCTGGTT 29631 ||| |||||||| ||||| ||||||||||| || || || |||||||||||||||||||| Sbjct 3110 GCCTTTCATCGTTCGAACTGTAAAGCCCCACGCTTCAGCCAGTTCGATAGCCTCCTGGTT 3051 Query 29632 ATGCGTGCCGGTGTACCACATCGCCAGCACCGAGTTTTCGGCGGCAAGCTCCCACACCGG 29691 |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| || Sbjct 3050 ATGCGTGCCGGTGTACCACATCGCCAGCACCGCGTTTTCAGCGGCAAGTTCCCACACAGG 2991 Query 29692 CAGGCGCTTAATGTCGATTAGCTTCATGGTTGAGTAGTGATCGGCGGCAGCGCCGTTGCT 29751 |||||||| |||||||||||||||||||| || |||||||| || || ||||||||||| Sbjct 2990 AAGGCGCTTGATGTCGATTAGCTTCATGGTGGAATAGTGATCTGCAGCGGCGCCGTTGCT 2931 Query 29752 GATGGTGTTGCCGTAAGACCAGGGCGGATCAGCGTAGATAAGAGCGTATTTTCCGGTCAT 29811 |||||||||||||||| |||||| ||||| || || | ||| | ||||||| | ||||| Sbjct 2930 AATGGTGTTGCCGTAAGCCCAGGGTGGATCGGCATACAAAAGTGAGTATTTTGCTGTCAT 2871 Query 29812 ACATCCTCCCGC 29823 | ||||| || Sbjct 2870 GCTGCCTCCTGC 2859 Score = 279 bits (308), Expect = 2e-70 Identities = 469/667 (70%), Gaps = 34/667 (5%) Strand=Plus/Minus Query 31478 ACTGACCCCACTTGATGACGCCAGCCGACTGGGCGATGTGTAGAAGGCCCATATAGCTGA 31537 |||| | ||||||||| | || | | ||| ||||| || | |||||||| ||||| | Sbjct 1015 ACTGGCACCACTTGATCGCCCCCGACTGCTGAGCGATATGCATCAGGCCCATGTAGCTAA 956 Query 31538 TATCGAGGCAGACCATACCGTCGCGCGGAACCAGATAAGCCAGTTTGCTG-GCAGGGTTC 31596 | |||||||||| | || | || || ||||||||||| || || ||| || ||||| Sbjct 955 TGTCGAGGCAGATGCTGCCTTTACGTGGCACCAGATAAGCAAGCTT-CTGCGCTGGGTTG 897 Query 31597 AGGCTAATGCCGACAGCTGCAACGTTGATAATCGCGTTCTGGGCGCTGGTGGGGTTG-GC 31655 || |||||||| ||| ||||||||||| ||||||||||| | ||| | |||| | Sbjct 896 AGCGAAATGCCGATAGCCGCAACGTTGATGATCGCGTTCTGCGTACTGCTCTGGTTCTGG 837 Query 31656 AATCGCCGTTTCTGCCAGTTTTTGATTGCGCTGGAATAACTGGATGGCGAACTGGCATTC 31715 ||| || || || || | | |||| || |||||||||||||||||||||| ||| Sbjct 836 AAT-GCAACTTTGGCGAGGTAGTCGTTGCTTTGAAATAACTGGATGGCGAACTGGCTTTC 778 Query 31716 CTTTGCCCAAGTCAGAGACTGGTCGGTAAGGGCTCCGACA--AAAAGCGGCTCCTGCTCC 31773 ||| ||||| || | || || || | || | |||||||||||||| | Sbjct 777 CTTCGCCCACACCATCCGTTCATCAGT--GGCCGCCTTAATGAAAAGCGGCTCCTGTTGT 720 Query 31774 TTTACGAACTGAATCAGATCGAAGCTCATAATCACTCCTTAAAACGGGCAGCCGGTACGG 31833 || | ||| | || || |||||||| ||| ||||||||||||| || | ||| Sbjct 719 TTGATGAAATCAACAAGGGTTAAGCTCATGATCCCTCCTTAAAACGGACATGGCGCCCGG 660 Query 31834 TGTTCCCAGTCGTATTCCGCCTGGGCGTAAGCAACTGCCGAA-ATGAAATCGTTGTAGGC 31892 | | ||| || | ||| || ||||||| |||| ||| | | ||| | |||||||| Sbjct 659 CGCTGCCATTCTTCTTCGGCGCGGGCGTA-GCAAATGCGGGAGATGTAGTCGTTGTATAT 601 Query 31893 CTCGCCAGCTTTA-------TCGCTGCGAAGTCCTTCGTATGGGCTGGAG-TCAATCGGG 31944 || ||| | | || ||||| | | | | | ||| | ||| ||| Sbjct 600 TTCCTGAGCCTCAGACCCAATCAGTGCGAGGCACGCCTCTT----TCGAGATGAATAGGG 545 Query 31945 ACCGAGAAGTGGAAGAGGCCGGACGGCTCTTTTGGCATCATGTCGATGATTTTCTGCGCC 32004 | || | | |||| ||| || |||| | |||| |||| | | | ||| Sbjct 544 AGCGC--ATTTGAAG--------CGGGTCAGTTGGAAACATGGCGATCAGCTCATTGGCC 495 Query 32005 CGGTCGTCGATCCACTTCTCTTTCTCGTCGTCGAGCTGCTGCTCAACCCAGCGCCGATTT 32064 |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | | Sbjct 494 CGGTCGTCGATCCACTTCTCTTTCTCTTCGTTGAGCTGTTGCTCAACCCAGCGCCGTTCT 435 Query 32065 TCGATTCGGTCGTAAGTGAGATATGCGTTCATGGCTGAACTCCTGAAATTTGGATGTGCA 32124 |||||||||||||||| || ||||||||||| || ||||||||||||||| ||||| Sbjct 434 TCGATTCGGTCGTAAGCTCGAAATGCGTTCATGACT--ACTCCTGAAATTTGGCTGTGCG 377 Query 32125 GATCCCG 32131 |||||| Sbjct 376 AATCCCG 370 Score = 129 bits (142), Expect = 2e-25 Identities = 116/142 (82%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 42262 GCCATAATCATGTCATCGGAGCCTGAACAACTCCGGTGACTTCTGCGCATTTAAGGGGAC 42321 ||||||||||||||| | |||| |||||||||| |||||||||||||| | | |||||| Sbjct 34677 GCCATAATCATGTCACCAGAGCTTGAACAACTCTGGTGACTTCTGCGC-TAAACGGGGAC 34619 Query 42322 TTAAATGCG--ACCACAATCTGAACTCCTC-ACCTTGTCACAGATGCAGAAATGCACCTG 42378 | ||||| | ||||| | || | | |||| ||||||||||||||||||||||| Sbjct 34618 GTTTATGCGCAAACACAAAGAGTACCGCACCACCTCATCACAGATGCAGAAATGCACCTG 34559 Query 42379 CGATTTTCTGCATTCTGCGTTT 42400 ||||| ||||||||||||| || Sbjct 34558 CGATTATCTGCATTCTGCGGTT 34537 Score = 80.6 bits (88), Expect = 8e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 34336 CGCCGCTGGCTAACTTCCCTCAGCTATCGATGTTTCGTTTCGATGGATT 34384 ||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 42275 CGCCGCTGGCTAACTTCGCTCAGCTGTCGATGTTTCGTTTCGATGGATT 42227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158407469302724