Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5580 165 1e-35 >seq5580 Length=7482 Score = 165 bits (182), Expect = 1e-35 Identities = 517/791 (65%), Gaps = 16/791 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| || || | ||||| ||||| || ||| |||| || || ||||| ||||| |||| Sbjct 5319 CATCACGCCGCTCTTTTGGTATTCGCCCACTT-TCTTCTCAAAGAAATTCGTCTTGCCTT 5377 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 ||| || || ||||||||||| || || || || | ||| || || | |||| Sbjct 5378 CTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATT 5437 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | ||| || |||| || || || || || ||||| | ||| | ||| ||| Sbjct 5438 GAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGT 5497 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109 | || |||| | ||| || | ||||| | ||||| | || ||||| | ||| Sbjct 5498 TCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTC-TTGCTCTATAACCACA 5556 Query 37110 GCATCTTTAACTATAT---TAACAATAACTTCTTCAG-TTGGGGGATATTTTAAATATTT 37165 ||||| | || | |||| | | | | | || | || |||| ||| Sbjct 5557 GCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACC----AAATGTTT 5612 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 ||| | || |||||||| ||||| ||||| || || | || | || || || Sbjct 5613 GTACATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGA 5672 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| |||||||| || || | ||| || || | |||||||| || Sbjct 5673 AAAAGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCC 5732 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 ||| || |||||||| || || |||||||| || | | || | | ||| || | Sbjct 5733 AGAGAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGT 5792 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 | ||||| |||||||| | |||||| ||||| || ||||| || ||||| Sbjct 5793 GTTGTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTC 5852 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 || ||| || || | | ||| || ||| | | |||||||| || |||| || Sbjct 5853 GATAGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTA--AA 5910 Query 37466 ACT--ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTA 37523 | | ||||||||| || ||||| ||||| || || ||||| || || || ||||| | Sbjct 5911 AGTGAATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGC 5970 Query 37524 GCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 ||||| | | || || || | ||| | || | ||||||||||| || || ||| Sbjct 5971 GCTTCGGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCA 6030 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAAT 37643 ||| || ||||||||||| | ||| | | | || || |||||||| | ||| Sbjct 6031 TCAGAGGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAAC 6090 Query 37644 TTTTTCCAATC 37654 |||| |||||| Sbjct 6091 TTTTCCCAATC 6101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591867905309160