Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq4723 185 2e-42 >seq4723 Length=43540 Score = 185 bits (204), Expect = 2e-42 Identities = 216/289 (75%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 9944 TTGTGTTGATTTTTAAAGTGATTTAtttttttAAATCCTCTATGCCATACTGTTCTGAAC 10003 ||| |||||||| || |||||||||||| | |||| | | | || | || || Sbjct 42162 TTGCGTTGATTTGTATGTTGATTTATTTTTGTG--TCCTGTTAG---TGCTATGCTCAAA 42108 Query 10004 AAAAAACGAGCGAGGA-ATCAGTGTGAAAAGTGAGGATGAGTTCTTTGCGGAGCTTCACC 10062 |||| | | ||||| || | ||| || || || || || || ||||||||||| | Sbjct 42107 AAAACATTACCGAGGGCATGGTTATGAGTAGCGAAGAGGAATTTTTCGCGGAGCTTCATC 42048 Query 10063 CGCAGGTGGTTGAGGTTCTCGGTACTGCGCTGATGCAGGTACTGGTAGAGCAGCGCGAAC 10122 |||| | || ||| |||| || | || | |||||||| ||||| |||||||| || | Sbjct 42047 CGCAAATAGTAGAGATTCTTGGCATAGCTGTTATGCAGGTGCTGGTTGAGCAGCGTGAGC 41988 Query 10123 CTTCGCGTGAAGCTTTGATAGAAATGATTCAGGTACTGTGGCAGGAAGAGGATGTGGACT 10182 | || | | || ||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 41987 CGTCAAGGAAGGCGCTGATAGAGATGATTCAGGTTCTGTGGCAGGAAGATGATGTGGACT 41928 Query 10183 TGGCTGTAGAACTGGCTATTGATGTTCTGACGCTGCCGAAAGAGTAGGG 10231 |||| ||||| |||||||||||||| ||| || | ||||||||||||| Sbjct 41927 TGGCAGTAGAGCTGGCTATTGATGTGCTGTCGTTATCGAAAGAGTAGGG 41879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128195636568820