Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_018279.1
Length=49116
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 383 5e-102
seq9686 311 3e-80
>seq4723
Length=43540
Score = 383 bits (424), Expect = 5e-102
Identities = 361/459 (79%), Gaps = 1/459 (0%)
Strand=Plus/Minus
Query 28762 TTCACAAAAATAATCCAGTGGGTTTTATCGTTCTTGCCGGTGCGCTGGCCAATAATTGGT 28821
|| || ||||| | |||||||||||| ||| || ||||||||||| | |||| ||||
Sbjct 5764 TTGACGAAAATCACCCAGTGGGTTTTGTCGGATTTTCCGGTGCGCTGCCAGATAACTGGT 5705
Query 28822 TTTACGTCCGTCAGCGCCAGAATCTGGCTTACCGGAATCTGCGTTTCGTTCCACTTGAAA 28881
|| ||||| |||| ||||| ||| | ||||||||| ||||||||||||||||| |||||
Sbjct 5704 TTCACGTCGGTCAACGCCAAAATATTGCTTACCGGGATCTGCGTTTCGTTCCATTTGAAG 5645
Query 28882 ATGAGAACACCGTGTGGCCGCAATACGCGGAATGCCTCTTTGAATCCGGCGCGGAGGTCA 28941
||||| || ||||||||||||| ||||||||||| || |||||| || || ||||||
Sbjct 5644 ATGAGTACGCCGTGTGGCCGCAGCACGCGGAATGCTTCGGAGAATCCAGCACGAAGGTCA 5585
Query 28942 GAACGCCATGTTT-TTTATTCAGGCGTCCGTATTTTTTACCCATCCAGGCGTTATCACCA 29000
|||||||||| ||| || || || ||||| |||||||||||||| |||||||| ||
Sbjct 5584 TCGCGCCATGTTTCTTTGTTGAGCCGCCCGTACTTTTTACCCATCCACGCGTTATCGCCG 5525
Query 29001 ACTCGCTCAAGATGCGGAGGGTCAAACACCACAACCGGAAAAGAAGAATCAGCGAACGGC 29060
|| ||||| || || || || || || || || || ||||| | ||| || || ||
Sbjct 5524 ACGCGCTCGAGGTGTGGGGGATCGAATACGACGACAGGAAATGTGTGATCGGCAAATGGA 5465
Query 29061 AGTGAACGAAAGTCGGCAATGAGGTCAGGACTGATAACCAGGCTGCGACCGTCGCACAAT 29120
|| | ||| || || ||||| ||||| || ||||||||||| |||||||||||| | |
Sbjct 5464 AGGGCACGGAAATCAGCAATAAGGTCCGGGCTGATAACCAGCTGGCGACCGTCGCAAAGT 5405
Query 29121 ATATGCTCCTCGTCGCGGATATCGGCGAATACGGCGCGTTCATCGCGCTTATTAAACCAG 29180
||||| |||| |||||||||| |||||| ||||| || || |||| | ||||||
Sbjct 5404 TCATGCTGCTCGGCGCGGATATCACTGAATACCGCGCGCTCGTCCTGCTTGTCGAACCAG 5345
Query 29181 AACATGCGCGAGCCGCAGCACATATCCAGAATAGCTTGC 29219
||||||||||| |||||||||||||| | ||| || |||
Sbjct 5344 AACATGCGCGACCCGCAGCACATATCTAAAATTGCCTGC 5306
>seq9686
Length=37809
Score = 311 bits (344), Expect = 3e-80
Identities = 413/572 (72%), Gaps = 5/572 (1%)
Strand=Plus/Plus
Query 48510 AACCATACACCAGGCTGATACCTGCGAGCGAAGTCAGTGAGTGGGTAAGCCGCCAAATCC 48569
||||||||| ||| | || ||||| ||| || |||| ||| || | | || || |
Sbjct 4943 AACCATACATCAGCGTAATGCCTGCTGACGATGTTGGTGACTGGCTACGTTGTCACATTC 5002
Query 48570 TCAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGACCTCT 48629
| || ||| ||| | || |||||| |||||| | || | | || || || || |
Sbjct 5003 TAAGTGATGACGGTGACCTCTTTAACCCAGACCACCAGCATTTACTTGAAGCGGATCTGT 5062
Query 48630 GCTTCATGTGGGCGTCCGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAAGCCG 48689
||||| | |||||||| | | |||| ||||||||||| | || || || || || |
Sbjct 5063 GCTTCCTCTGGGCGTCGAACGCTTTCGAGAAGAAAGGGCGTTCCGTTCTTGGGCAGGCGG 5122
Query 48690 AGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTATG 48749
| | || | | || || ||||| ||||||||||| | ||||| ||||| ||||| |
Sbjct 5123 AAGAAGTTGCGATGCGGGCAGGTGGATGGCAGAAAGCGCGCATGGAGCAGCAAATGTACG 5182
Query 48750 AATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAAT 48809
|||||||||| | | ||| |||||||||||||||||||||| |||||||| || ||||
Sbjct 5183 AATGGTTCGGCAGGGTGCCGCAGTTCATCATCACGCTGGCAGCAGATTACTGTTCGCAAT 5242
Query 48810 GCAATGACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCA 48869
| || || ||||||||||| ||| ||||||| |||||||| ||||| ||||| |
Sbjct 5243 GTTCCGATCTGGAGTTCTGCGCCCTGTTAGAGCACGAGCTTTATCACATTAGCCAGGCGA 5302
Query 48870 CCGATGATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCAT-CCATTGCTTACACTG 48928
| ||||| || || ||||| ||||||| | || ||||| ||| || | |||
Sbjct 5303 CAGATGAATTTGGCGCGCCGAAGTTCACGCAGGA----AGGCATGCCAAAACTGAAGCTG 5358
Query 48929 CGCGGCCACGACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGCAAAGAA 48988
|| |||||||| || ||||| || | ||||| || || || |||||||| ||| |||
Sbjct 5359 CGTGGCCACGATGTGGAAGAGTTTGTCGGTGTGGTTCGCCGCTACGGTGCGAGCCGTGAA 5418
Query 48989 GTACAGGAGCTTGTTGATGCGGCCAAAGCGCCAGCAGAAGTGGCTCACATCGATATAGCC 49048
|| ||||| | |||||||||| || |||||| || || ||||| ||||||| |||
Sbjct 5419 GTGCAGGAAATGATTGATGCGGCGAATCAGCCAGCGGAGGTTGCTCATCTCGATATTGCC 5478
Query 49049 AGGTCATGCGGCACATGCATGTTAAAACTGGC 49080
|| | ||||| || |||||| | ||||||
Sbjct 5479 AGAGCTTGCGGGACTTGCATGCTGCGACTGGC 5510
Score = 228 bits (252), Expect = 3e-55
Identities = 279/381 (73%), Gaps = 0/381 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACACTGAAAGGTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGAT 60
||||| || | ||| ||| || ||||||||||||||||||| ||||| || | ||
Sbjct 5545 ATGGCTGCATTAAAACCTGATGTGAAAGCCTTCATCGTTCAGTTGCTTGCGTGCTATGAC 5604
Query 61 ACTCCATCCCAGGTGGTTGAGCTGGTCAAAAAAGAATTTGGCCTGAGCATCACACGTCAG 120
|| ||||| || ||||| ||| ||| ||||||| || ||| | | ||||| || |||
Sbjct 5605 ACGCCATCGCAAGTGGTCGAGACTGTCCAAAAAGAGTTCGGCATCAAGATCACCCGGCAG 5664
Query 121 CAGGTCGAATCCCACGACCCGACGAAAGCAAACGGCAGGGGCCTGGCGCAGAAATGGGTG 180
|||| |||||| ||||| ||||| || || | ||| | | || ||| |||| ||| |
Sbjct 5665 CAGGCCGAATCGCACGATCCGACCAAGGCCAGCGGTAAGACGCTCGCGAAGAAGTGGATC 5724
Query 181 GACATGTTCAATGCCACCCGTAAACGATTCCAGAATGAGATCGCCGACATACCGATCGCG 240
|| |||||| | || || || |||| |||| || || | | |||||| ||||||||
Sbjct 5725 GAGATGTTCCACGCGACGCGAGAACGCTTCCTGACCGAAACCAGCGACATTCCGATCGCC 5784
Query 241 AACAAAGCGTACCGGTTACGCGTTCTCGACCGAATGGCGACCAATGCTGAAAAGATGAAG 300
|||||| | || || | ||||| || ||||| ||||| ||||| | ||| | |||||
Sbjct 5785 AACAAATCCTATCGCCTCCGCGTGCTTGACCGTATGGCTACCAAAACCGAAGGGCTGAAG 5844
Query 301 AACTACGGCATGACCTCGCAACTTATCGAGCAGGCCGCCAAAGAAATGGGCGATGCCTAC 360
|||| | | |||| |||| || || || |||||||| ||||| ||||||| || |||
Sbjct 5845 AACTTCTCCCTGACGGCGCAGCTGATTGAACAGGCCGCGAAAGAGGTGGGCGACGCTTAC 5904
Query 361 ACTAATCGCCAGAAAGTCGAG 381
|| ||| | |||||| |||
Sbjct 5905 ACCAATAAGCTGAAAGTGGAG 5925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156936529097644
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