Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq4723 383 5e-102 seq9686 311 3e-80 >seq4723 Length=43540 Score = 383 bits (424), Expect = 5e-102 Identities = 361/459 (79%), Gaps = 1/459 (0%) Strand=Plus/Minus Query 28762 TTCACAAAAATAATCCAGTGGGTTTTATCGTTCTTGCCGGTGCGCTGGCCAATAATTGGT 28821 || || ||||| | |||||||||||| ||| || ||||||||||| | |||| |||| Sbjct 5764 TTGACGAAAATCACCCAGTGGGTTTTGTCGGATTTTCCGGTGCGCTGCCAGATAACTGGT 5705 Query 28822 TTTACGTCCGTCAGCGCCAGAATCTGGCTTACCGGAATCTGCGTTTCGTTCCACTTGAAA 28881 || ||||| |||| ||||| ||| | ||||||||| ||||||||||||||||| ||||| Sbjct 5704 TTCACGTCGGTCAACGCCAAAATATTGCTTACCGGGATCTGCGTTTCGTTCCATTTGAAG 5645 Query 28882 ATGAGAACACCGTGTGGCCGCAATACGCGGAATGCCTCTTTGAATCCGGCGCGGAGGTCA 28941 ||||| || ||||||||||||| ||||||||||| || |||||| || || |||||| Sbjct 5644 ATGAGTACGCCGTGTGGCCGCAGCACGCGGAATGCTTCGGAGAATCCAGCACGAAGGTCA 5585 Query 28942 GAACGCCATGTTT-TTTATTCAGGCGTCCGTATTTTTTACCCATCCAGGCGTTATCACCA 29000 |||||||||| ||| || || || ||||| |||||||||||||| |||||||| || Sbjct 5584 TCGCGCCATGTTTCTTTGTTGAGCCGCCCGTACTTTTTACCCATCCACGCGTTATCGCCG 5525 Query 29001 ACTCGCTCAAGATGCGGAGGGTCAAACACCACAACCGGAAAAGAAGAATCAGCGAACGGC 29060 || ||||| || || || || || || || || || ||||| | ||| || || || Sbjct 5524 ACGCGCTCGAGGTGTGGGGGATCGAATACGACGACAGGAAATGTGTGATCGGCAAATGGA 5465 Query 29061 AGTGAACGAAAGTCGGCAATGAGGTCAGGACTGATAACCAGGCTGCGACCGTCGCACAAT 29120 || | ||| || || ||||| ||||| || ||||||||||| |||||||||||| | | Sbjct 5464 AGGGCACGGAAATCAGCAATAAGGTCCGGGCTGATAACCAGCTGGCGACCGTCGCAAAGT 5405 Query 29121 ATATGCTCCTCGTCGCGGATATCGGCGAATACGGCGCGTTCATCGCGCTTATTAAACCAG 29180 ||||| |||| |||||||||| |||||| ||||| || || |||| | |||||| Sbjct 5404 TCATGCTGCTCGGCGCGGATATCACTGAATACCGCGCGCTCGTCCTGCTTGTCGAACCAG 5345 Query 29181 AACATGCGCGAGCCGCAGCACATATCCAGAATAGCTTGC 29219 ||||||||||| |||||||||||||| | ||| || ||| Sbjct 5344 AACATGCGCGACCCGCAGCACATATCTAAAATTGCCTGC 5306 >seq9686 Length=37809 Score = 311 bits (344), Expect = 3e-80 Identities = 413/572 (72%), Gaps = 5/572 (1%) Strand=Plus/Plus Query 48510 AACCATACACCAGGCTGATACCTGCGAGCGAAGTCAGTGAGTGGGTAAGCCGCCAAATCC 48569 ||||||||| ||| | || ||||| ||| || |||| ||| || | | || || | Sbjct 4943 AACCATACATCAGCGTAATGCCTGCTGACGATGTTGGTGACTGGCTACGTTGTCACATTC 5002 Query 48570 TCAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGACCTCT 48629 | || ||| ||| | || |||||| |||||| | || | | || || || || | Sbjct 5003 TAAGTGATGACGGTGACCTCTTTAACCCAGACCACCAGCATTTACTTGAAGCGGATCTGT 5062 Query 48630 GCTTCATGTGGGCGTCCGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAAGCCG 48689 ||||| | |||||||| | | |||| ||||||||||| | || || || || || | Sbjct 5063 GCTTCCTCTGGGCGTCGAACGCTTTCGAGAAGAAAGGGCGTTCCGTTCTTGGGCAGGCGG 5122 Query 48690 AGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTATG 48749 | | || | | || || ||||| ||||||||||| | ||||| ||||| ||||| | Sbjct 5123 AAGAAGTTGCGATGCGGGCAGGTGGATGGCAGAAAGCGCGCATGGAGCAGCAAATGTACG 5182 Query 48750 AATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAAT 48809 |||||||||| | | ||| |||||||||||||||||||||| |||||||| || |||| Sbjct 5183 AATGGTTCGGCAGGGTGCCGCAGTTCATCATCACGCTGGCAGCAGATTACTGTTCGCAAT 5242 Query 48810 GCAATGACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCA 48869 | || || ||||||||||| ||| ||||||| |||||||| ||||| ||||| | Sbjct 5243 GTTCCGATCTGGAGTTCTGCGCCCTGTTAGAGCACGAGCTTTATCACATTAGCCAGGCGA 5302 Query 48870 CCGATGATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCAT-CCATTGCTTACACTG 48928 | ||||| || || ||||| ||||||| | || ||||| ||| || | ||| Sbjct 5303 CAGATGAATTTGGCGCGCCGAAGTTCACGCAGGA----AGGCATGCCAAAACTGAAGCTG 5358 Query 48929 CGCGGCCACGACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGCAAAGAA 48988 || |||||||| || ||||| || | ||||| || || || |||||||| ||| ||| Sbjct 5359 CGTGGCCACGATGTGGAAGAGTTTGTCGGTGTGGTTCGCCGCTACGGTGCGAGCCGTGAA 5418 Query 48989 GTACAGGAGCTTGTTGATGCGGCCAAAGCGCCAGCAGAAGTGGCTCACATCGATATAGCC 49048 || ||||| | |||||||||| || |||||| || || ||||| ||||||| ||| Sbjct 5419 GTGCAGGAAATGATTGATGCGGCGAATCAGCCAGCGGAGGTTGCTCATCTCGATATTGCC 5478 Query 49049 AGGTCATGCGGCACATGCATGTTAAAACTGGC 49080 || | ||||| || |||||| | |||||| Sbjct 5479 AGAGCTTGCGGGACTTGCATGCTGCGACTGGC 5510 Score = 228 bits (252), Expect = 3e-55 Identities = 279/381 (73%), Gaps = 0/381 (0%) Strand=Plus/Plus Query 1 ATGGCGACACTGAAAGGTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGAT 60 ||||| || | ||| ||| || ||||||||||||||||||| ||||| || | || Sbjct 5545 ATGGCTGCATTAAAACCTGATGTGAAAGCCTTCATCGTTCAGTTGCTTGCGTGCTATGAC 5604 Query 61 ACTCCATCCCAGGTGGTTGAGCTGGTCAAAAAAGAATTTGGCCTGAGCATCACACGTCAG 120 || ||||| || ||||| ||| ||| ||||||| || ||| | | ||||| || ||| Sbjct 5605 ACGCCATCGCAAGTGGTCGAGACTGTCCAAAAAGAGTTCGGCATCAAGATCACCCGGCAG 5664 Query 121 CAGGTCGAATCCCACGACCCGACGAAAGCAAACGGCAGGGGCCTGGCGCAGAAATGGGTG 180 |||| |||||| ||||| ||||| || || | ||| | | || ||| |||| ||| | Sbjct 5665 CAGGCCGAATCGCACGATCCGACCAAGGCCAGCGGTAAGACGCTCGCGAAGAAGTGGATC 5724 Query 181 GACATGTTCAATGCCACCCGTAAACGATTCCAGAATGAGATCGCCGACATACCGATCGCG 240 || |||||| | || || || |||| |||| || || | | |||||| |||||||| Sbjct 5725 GAGATGTTCCACGCGACGCGAGAACGCTTCCTGACCGAAACCAGCGACATTCCGATCGCC 5784 Query 241 AACAAAGCGTACCGGTTACGCGTTCTCGACCGAATGGCGACCAATGCTGAAAAGATGAAG 300 |||||| | || || | ||||| || ||||| ||||| ||||| | ||| | ||||| Sbjct 5785 AACAAATCCTATCGCCTCCGCGTGCTTGACCGTATGGCTACCAAAACCGAAGGGCTGAAG 5844 Query 301 AACTACGGCATGACCTCGCAACTTATCGAGCAGGCCGCCAAAGAAATGGGCGATGCCTAC 360 |||| | | |||| |||| || || || |||||||| ||||| ||||||| || ||| Sbjct 5845 AACTTCTCCCTGACGGCGCAGCTGATTGAACAGGCCGCGAAAGAGGTGGGCGACGCTTAC 5904 Query 361 ACTAATCGCCAGAAAGTCGAG 381 || ||| | |||||| ||| Sbjct 5905 ACCAATAAGCTGAAAGTGGAG 5925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156936529097644