Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_018454.1
Length=39974
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 401 2e-107
>seq4723
Length=43540
Score = 401 bits (444), Expect = 2e-107
Identities = 467/630 (74%), Gaps = 0/630 (0%)
Strand=Plus/Minus
Query 3028 AACCTCAACGGCGCAGCCAGGCAGAAGCTGAACAGCGGAGGATTCACACTGGTTGCCCCA 3087
||| |||| ||||| || ||||| | | ||| |||| || ||||| || |||||
Sbjct 3509 AACTTCAATTGCGCAACCGGGCAGCAATTCAACCGCGGCGGTGGTGCACTGATTTCCCCA 3450
Query 3088 GTGATCCCAGCCTGGCGCCGCTGAACGGCTAAATAACTCGATGCGCGGCACGTCACCATA 3147
||| | ||||||||||||||| ||||| || ||||| ||||| ||||| ||||| ||
Sbjct 3449 GTGGTGCCAGCCTGGCGCCGCACTGCGGCTGAACAACTCAATGCGTGGCACATCACCGTA 3390
Query 3148 GAGACGTTCTAACCGATGGCGGGCCTCCCAGGGTTTCGCACTATGGCGGCCTAACGGGCT 3207
|| |||||| || || || | ||||| || || | ||||| ||| | |||||
Sbjct 3389 AAGCAGTTCTAGTCGGTGACGAACTTCCCACGGCTTTTCGCTATGCGCGCCGAGAGGGCT 3330
Query 3208 GTAGATAACCTGTTTCACGCTGGCATCTTTGCGTTCGAGCCCGGCGCCGCGGGTAGCGAT 3267
||||| |||||| || | | ||| | |||||| || |||| ||||||||| || ||
Sbjct 3329 GTAGACAACCTGCTTAATTCCGGCGTTCAGGCGTTCCAGGCCGGTGCCGCGGGTGGCAAT 3270
Query 3268 AAGAAGATCCTCGGTGTTGGCCCGCGTATGGTTTCCGCCATTCATGCGCGTTTGCGCGTT 3327
|| || ||||| || |||||||| || ||||| ||||| ||||||||||| | |||||
Sbjct 3269 CAGCAGGTCCTCTGTATTGGCCCGGGTGTGGTTGCCGCCGTTCATGCGCGTCTCGGCGTT 3210
Query 3328 AAGCAGGTGCAAAAAGTCGTGAAAATCCTCAATTTCGCCAGCTTCCAGCGCTTTATTGAT 3387
||| || | | ||||| | ||| ||| ||||| || | ||||||| || |||||
Sbjct 3209 AAGTAGATCGAGGAAGTCATAAAAGTCCGTGATTTCACCCTCGGCCAGCGCCTTGTTGAT 3150
Query 3388 GTGCTGCTCTGCCAGTTGGTTGAGTTTAACCCATGTAAAGCCCTTCATGGTGCGCACCGT 3447
| || | || || || || || || ||||| |||||||| ||||| || || || ||
Sbjct 3149 GCGCAGTTCGGCGTTCTGATTCAGCTTCACCCAGGTAAAGCCTTTCATCGTTCGAACTGT 3090
Query 3448 AAAGCCCCAGGCTTCGGCCAGATCCATAGCTTCACGGTTGTGGGTGCCGGTGTACCACAT 3507
||||||||| ||||| ||||| || ||||| || |||| || |||||||||||||||||
Sbjct 3089 AAAGCCCCACGCTTCAGCCAGTTCGATAGCCTCCTGGTTATGCGTGCCGGTGTACCACAT 3030
Query 3508 CGCCAGAACGGCGTTTTCTGCGGCCAGCTCCCACACAGGGAGGCGTTTCATATCGATCAA 3567
|||||| || |||||||| ||||| || ||||||||||| ||||| || || ||||| |
Sbjct 3029 CGCCAGCACCGCGTTTTCAGCGGCAAGTTCCCACACAGGAAGGCGCTTGATGTCGATTAG 2970
Query 3568 GCTCATGGTGTCGTAATGGCTGGCTGCCGCGCCGTTGCTTACTGTGTTGCCGTAGCTCCA 3627
|||||||| || || || || ||||||||||| | ||||||||||| |||
Sbjct 2969 CTTCATGGTGGAATAGTGATCTGCAGCGGCGCCGTTGCTAATGGTGTTGCCGTAAGCCCA 2910
Query 3628 CGCGGGATCTGCATAGATAAGCGAATACTT 3657
| ||||| ||||| | ||| || || ||
Sbjct 2909 GGGTGGATCGGCATACAAAAGTGAGTATTT 2880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127703191369728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |