Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq4723 401 2e-107 >seq4723 Length=43540 Score = 401 bits (444), Expect = 2e-107 Identities = 467/630 (74%), Gaps = 0/630 (0%) Strand=Plus/Minus Query 3028 AACCTCAACGGCGCAGCCAGGCAGAAGCTGAACAGCGGAGGATTCACACTGGTTGCCCCA 3087 ||| |||| ||||| || ||||| | | ||| |||| || ||||| || ||||| Sbjct 3509 AACTTCAATTGCGCAACCGGGCAGCAATTCAACCGCGGCGGTGGTGCACTGATTTCCCCA 3450 Query 3088 GTGATCCCAGCCTGGCGCCGCTGAACGGCTAAATAACTCGATGCGCGGCACGTCACCATA 3147 ||| | ||||||||||||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 3449 GTGGTGCCAGCCTGGCGCCGCACTGCGGCTGAACAACTCAATGCGTGGCACATCACCGTA 3390 Query 3148 GAGACGTTCTAACCGATGGCGGGCCTCCCAGGGTTTCGCACTATGGCGGCCTAACGGGCT 3207 || |||||| || || || | ||||| || || | ||||| ||| | ||||| Sbjct 3389 AAGCAGTTCTAGTCGGTGACGAACTTCCCACGGCTTTTCGCTATGCGCGCCGAGAGGGCT 3330 Query 3208 GTAGATAACCTGTTTCACGCTGGCATCTTTGCGTTCGAGCCCGGCGCCGCGGGTAGCGAT 3267 ||||| |||||| || | | ||| | |||||| || |||| ||||||||| || || Sbjct 3329 GTAGACAACCTGCTTAATTCCGGCGTTCAGGCGTTCCAGGCCGGTGCCGCGGGTGGCAAT 3270 Query 3268 AAGAAGATCCTCGGTGTTGGCCCGCGTATGGTTTCCGCCATTCATGCGCGTTTGCGCGTT 3327 || || ||||| || |||||||| || ||||| ||||| ||||||||||| | ||||| Sbjct 3269 CAGCAGGTCCTCTGTATTGGCCCGGGTGTGGTTGCCGCCGTTCATGCGCGTCTCGGCGTT 3210 Query 3328 AAGCAGGTGCAAAAAGTCGTGAAAATCCTCAATTTCGCCAGCTTCCAGCGCTTTATTGAT 3387 ||| || | | ||||| | ||| ||| ||||| || | ||||||| || ||||| Sbjct 3209 AAGTAGATCGAGGAAGTCATAAAAGTCCGTGATTTCACCCTCGGCCAGCGCCTTGTTGAT 3150 Query 3388 GTGCTGCTCTGCCAGTTGGTTGAGTTTAACCCATGTAAAGCCCTTCATGGTGCGCACCGT 3447 | || | || || || || || || ||||| |||||||| ||||| || || || || Sbjct 3149 GCGCAGTTCGGCGTTCTGATTCAGCTTCACCCAGGTAAAGCCTTTCATCGTTCGAACTGT 3090 Query 3448 AAAGCCCCAGGCTTCGGCCAGATCCATAGCTTCACGGTTGTGGGTGCCGGTGTACCACAT 3507 ||||||||| ||||| ||||| || ||||| || |||| || ||||||||||||||||| Sbjct 3089 AAAGCCCCACGCTTCAGCCAGTTCGATAGCCTCCTGGTTATGCGTGCCGGTGTACCACAT 3030 Query 3508 CGCCAGAACGGCGTTTTCTGCGGCCAGCTCCCACACAGGGAGGCGTTTCATATCGATCAA 3567 |||||| || |||||||| ||||| || ||||||||||| ||||| || || ||||| | Sbjct 3029 CGCCAGCACCGCGTTTTCAGCGGCAAGTTCCCACACAGGAAGGCGCTTGATGTCGATTAG 2970 Query 3568 GCTCATGGTGTCGTAATGGCTGGCTGCCGCGCCGTTGCTTACTGTGTTGCCGTAGCTCCA 3627 |||||||| || || || || ||||||||||| | ||||||||||| ||| Sbjct 2969 CTTCATGGTGGAATAGTGATCTGCAGCGGCGCCGTTGCTAATGGTGTTGCCGTAAGCCCA 2910 Query 3628 CGCGGGATCTGCATAGATAAGCGAATACTT 3657 | ||||| ||||| | ||| || || || Sbjct 2909 GGGTGGATCGGCATACAAAAGTGAGTATTT 2880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127703191369728