Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 167 2e-36
seq3468 127 2e-24
>seq6222
Length=12937
Score = 167 bits (184), Expect = 2e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| |||| ||||||| ||| || |||||||| ||||||||||| ||||||||||| |
Sbjct 4194 CCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAT 4253
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | || ||||| || || || || || || || || ||||||||||| |||
Sbjct 4254 AAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGA 4313
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||| ||||| ||||| ||| || |||| | |||||||| | || |||
Sbjct 4314 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACT 4373
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | ||||| ||||||||||| | ||| || || || ||||||||
Sbjct 4374 TCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420
Score = 161 bits (178), Expect = 8e-35
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|||| |||||| ||||||||||| || || ||||| |||| | ||| | |||| ||
Sbjct 3984 ACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTCT 4043
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| ||||| || ||||| |||||||| ||||||||||| ||||||||||| || |||||
Sbjct 4044 AACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCTTGG 4103
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| || || | || | ||||| || | ||| ||||| | ||||| ||| |||
Sbjct 4104 ATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTCTTG 4163
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | ||||||||||| ||||||||
Sbjct 4164 CCAGTGAGGGTTTTTACAAAAATCTGCAT 4192
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| |||| ||||| | ||| || |||||||| ||||||||||| ||||||||||| |
Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | || |||| |||||| || || || || | ||| ||||| || || |||
Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||| ||||| || || ||| || |||| | |||||||||| || |||
Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | ||||| ||||||||||| ||||| || || || || |||||
Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648
Score = 150 bits (166), Expect = 1e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || ||||| || || ||||| || || ||||| || |||| | || | |
Sbjct 3749 ACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACC 3808
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| |||||||||||||| || || |||||||| || |||||||| ||||| ||||| ||
Sbjct 3809 ATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTT 3868
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||||||||||| ||| || |||| | ||||| |||| ||| ||||| | ||||
Sbjct 3869 GTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGAT 3928
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||||| || || ||||| || || || |||||
Sbjct 3929 GGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964
Score = 150 bits (166), Expect = 1e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| |||| ||||| | ||| || |||||||| ||||||||||| || ||||| || |
Sbjct 4878 CCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 4937
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | | || |||||||| || || || || |||||||| ||||||||||| |||
Sbjct 4938 AAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGA 4997
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||| ||||| ||||| || || |||| | ||||| |||| || |||
Sbjct 4998 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACT 5057
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| | || | || ||||| || || ||||| || || || ||||||
Sbjct 5058 TCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105
Score = 143 bits (158), Expect = 2e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || |||||||| ||||| || ||||| || | | || | | || |||
Sbjct 4668 ACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCC 4727
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
||||| || || || || || ||||| |||||||| || |||||||||||||||||||||
Sbjct 4728 AATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGA 4787
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| ||| || | || | |||||| || | ||| ||||| | ||||| ||| ||
Sbjct 4788 ATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTT 4847
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | |||||| || || || |||||
Sbjct 4848 CCCGTGAGAGTTTTGACGAAAATTTGCAT 4876
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || ||||| ||||| |||||||| || || |||||||| | | || | |
Sbjct 5117 ACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACC 5176
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| ||||||||||| || || || || ||||| || || || || || || ||||||||
Sbjct 5177 ATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTT 5236
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||||||||||| ||| || |||| | || || || | || ||||| || || |
Sbjct 5237 GTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAAT 5296
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || | || || || || || |||||
Sbjct 5297 AGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332
>seq3468
Length=50068
Score = 127 bits (140), Expect = 2e-24
Identities = 144/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339
|||| || || ||||| || | | ||| ||| | || |||||||| || || || || |
Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408
Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399
||||||| ||||||||||| || || ||||| || ||||| ||||| || ||| |||
Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348
Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459
| | |||||| || | || || ||||| |||| || || || || ||||| || || |
Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288
Query 101460 ATATCTGCATGGT 101472
| |||||||||||
Sbjct 38287 AGATCTGCATGGT 38275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395985583574553
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |