Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq6222 167 2e-36 seq3468 127 2e-24 >seq6222 Length=12937 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||||||| ||| || |||||||| ||||||||||| ||||||||||| | Sbjct 4194 CCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAT 4253 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || ||||| || || || || || || || || ||||||||||| ||| Sbjct 4254 AAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGA 4313 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| ||||| ||| || |||| | |||||||| | || ||| Sbjct 4314 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACT 4373 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||||||||| | ||| || || || |||||||| Sbjct 4374 TCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 161 bits (178), Expect = 8e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| |||||| ||||||||||| || || ||||| |||| | ||| | |||| || Sbjct 3984 ACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTCT 4043 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || ||||| |||||||| ||||||||||| ||||||||||| || ||||| Sbjct 4044 AACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCTTGG 4103 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || || | || | ||||| || | ||| ||||| | ||||| ||| ||| Sbjct 4104 ATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTCTTG 4163 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||||||||| |||||||| Sbjct 4164 CCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||||| | ||| || |||||||| ||||||||||| ||||||||||| | Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || |||| |||||| || || || || | ||| ||||| || || ||| Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| || || ||| || |||| | |||||||||| || ||| Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||||||||| ||||| || || || || ||||| Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| || || ||||| || || ||||| || |||| | || | | Sbjct 3749 ACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACC 3808 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||||||||| || || |||||||| || |||||||| ||||| ||||| || Sbjct 3809 ATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTT 3868 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||| ||| || |||| | ||||| |||| ||| ||||| | |||| Sbjct 3869 GTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGAT 3928 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || ||||| || || || ||||| Sbjct 3929 GGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||||| | ||| || |||||||| ||||||||||| || ||||| || | Sbjct 4878 CCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 4937 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || |||||||| || || || || |||||||| ||||||||||| ||| Sbjct 4938 AAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGA 4997 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| ||||| || || |||| | ||||| |||| || ||| Sbjct 4998 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACT 5057 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | || | || ||||| || || ||||| || || || |||||| Sbjct 5058 TCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || |||||||| ||||| || ||||| || | | || | | || ||| Sbjct 4668 ACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCC 4727 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || || || || || ||||| |||||||| || ||||||||||||||||||||| Sbjct 4728 AATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGA 4787 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| || | || | |||||| || | ||| ||||| | ||||| ||| || Sbjct 4788 ATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTT 4847 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| || || || ||||| Sbjct 4848 CCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| ||||| |||||||| || || |||||||| | | || | | Sbjct 5117 ACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACC 5176 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||||||||| || || || || ||||| || || || || || || |||||||| Sbjct 5177 ATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTT 5236 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||| ||| || |||| | || || || | || ||||| || || | Sbjct 5237 GTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAAT 5296 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || || ||||| Sbjct 5297 AGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 >seq3468 Length=50068 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339 |||| || || ||||| || | | ||| ||| | || |||||||| || || || || | Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408 Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399 ||||||| ||||||||||| || || ||||| || ||||| ||||| || ||| ||| Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348 Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459 | | |||||| || | || || ||||| |||| || || || || ||||| || || | Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288 Query 101460 ATATCTGCATGGT 101472 | ||||||||||| Sbjct 38287 AGATCTGCATGGT 38275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395985583574553