Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq4723 500 3e-137 seq9686 453 4e-123 >seq4723 Length=43540 Score = 500 bits (554), Expect = 3e-137 Identities = 522/685 (76%), Gaps = 0/685 (0%) Strand=Plus/Minus Query 9755 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 9814 ||||||||| ||| || || || ||||| || || || || ||||| || |||||||| Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220 Query 9815 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 9874 |||||||||||||| |||||| |||||||| || || || || ||||||| ||||| Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160 Query 9875 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 9934 || | |||||| || ||||||||||||||||| ||||| ||| ||||||||| ||| | Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100 Query 9935 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 9994 |||| |||||||||| | || |||||||||||||| || | |||||| || |||||||| Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040 Query 9995 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10054 |||||||| ||||||||||||||||||||| || |||||||| || || || || || Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980 Query 10055 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10114 ||| ||||| | ||||| ||||||||||| |||||||| | ||||| || || | Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920 Query 10115 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10174 || |||| || ||||||||| | | | || ||||| |||| || || || || Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860 Query 10175 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10234 |||| |||| || |||||||| |||||||| |||||||||||||| | ||||| || || Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800 Query 10235 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10294 ||||| |||||||||||||||||||| |||||||| | || | ||| || | ||||| Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740 Query 10295 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10354 || || || | || || ||| ||||| || || || || || ||||| | |||| | Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680 Query 10355 GTGCCATCCATCATCGCCCTGGTCGAGGCTGGTAATATCCACGCCAGTTCGCTGGAGAAT 10414 ||||| | |||||||| || |||| | || | || | ||| || || || || Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620 Query 10415 AATTTCTGGTGTCATGACACGGCCT 10439 |||||| ||||||||| |||||| Sbjct 1619 AATTTCAGGTGTCATGCTGCGGCCT 1595 Score = 111 bits (122), Expect = 6e-20 Identities = 479/736 (65%), Gaps = 35/736 (5%) Strand=Plus/Minus Query 143 CATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAG--TGCCCCATCTGTGAT 200 ||||||| ||| ||||| | | | ||||| ||| ||| || |||||||| ||||| Sbjct 8131 CATCCATTTACCGTAAACCTGGAATACCAT-CTG-CGCATCAGCATGCCCCATTTGTGAC 8074 Query 201 GCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGTGAC 260 ||||| |||| ||||| || ||||| | || | |||||| || || || || | ||| Sbjct 8073 GCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGTGTGCCTGGAC 8014 Query 261 TGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCTCCG 320 ||||| | || | | || || || || | ||||| ||||| |||||||| || | Sbjct 8013 TGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTACTGCTGTGTCCCATGTTTGTCTG 7954 Query 321 ATGGAGCTTACCGCGTAGTTAATACCAGCCTTGT--GATTCTTGCG--AAC-GATTTGCG 375 | || || | | ||| | || || | | | ||| | | ||| || | Sbjct 7953 ACAGAATCGACAGTGAAGTGATCGCC-GCATACTCCGGTTCGGGAGGTAACAGAA----G 7899 Query 376 GACAGAAA-ACAAAAGTGCACTCGTGCAAAATTGTTCTT----CCGTACTCGCGTAATTG 430 || ||||| ||||| || || |||||| || | ||| || || || || | || Sbjct 7898 GA-AGAAACACAAAGGTACATTCGTGC----TTTTCCTTTTTACCATATTCCCGCAGGTG 7844 Query 431 AACAGTGATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTC 490 |||| | | |||| | | | ||| || | | | | || |||| || || || Sbjct 7843 AACATCCAGCACGTGCTCCTTTCCAAGTCGTGATATCTCCAGTTGACTTTTGAGCGCCTC 7784 Query 491 AATTGCTGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGT 550 ||||| ||| | || |||||||||| ||| || || || | ||||||||| | ||| Sbjct 7783 TATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGGAACCGT 7724 Query 551 AAAATCACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGAT 610 ||| | | | || | || |||| | | | ||||| ||| |||||||||||| Sbjct 7723 AAATTTATCC---TTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAGGTCGAT 7667 Query 611 ATCCTCCCATGC--AAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACT 668 ||||||||| | ||| || ||| || || ||| | |||||| | |||| | Sbjct 7666 ATCCTCCCAGCCTAAAGAGC-ACAA-CTCCCCAGGTCTAAGTCCTGTATAGACAGAAAGC 7609 Query 669 GTCCAGAGGTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCT 728 | ||| || ||||| | ||| || | |||| ||||| ||||| | | ||||| || Sbjct 7608 GCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGATGAGCCTGACGAACTCCTCC 7549 Query 729 CTGGTCAGTGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGG 788 || | || || || || || | || | ||| ||||||| ||| || ||||| Sbjct 7548 CTTGAAAGCGGGTCAGGAACAACTCGCGACTCCCTGAGCGGTGATATGCCTTTGAACGGA 7489 Query 789 TTTTTCTCCAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCG-GCTGTTGTTGTCA 846 || | || | ||| || || || | |||| ||| |||| | || | | | | |||| Sbjct 7488 TTATCATCGATATAGCCATTCTCCATGCCAAA-CTGAAACACTGCGTACAGGT-TGGTCA 7431 Query 847 TGTAATAGTTCACTGT 862 |||| | ||||||||| Sbjct 7430 TGTAGTTGTTCACTGT 7415 Score = 91.5 bits (100), Expect = 6e-14 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 14202 TCCTGCCAGTGTTGCCCGTTCTCACGCCGTTCTCGCTCTCGCGCGGGGATA-CTCTCTCA 14260 ||| ||||||||||||||||| |||||| | |||||||| || |||| || | ||||| Sbjct 42447 TCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTAGCCTTCTCA 42388 Query 14261 TCGACCGGATCGCACCCGATGATACAGCACGTTTACGTGTAGGGGTCTAAACAGG 14315 | |||||||||| | | |||||| | | ||| | || |||||||||||||| Sbjct 42387 CCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAACAGG 42333 >seq9686 Length=37809 Score = 453 bits (502), Expect = 4e-123 Identities = 955/1402 (68%), Gaps = 38/1402 (3%) Strand=Plus/Plus Query 19032 ATGCTGAAAATCACCCCAAACTTTGCTCAGGAGCGCGGTTTAAACCAGCTGCGGCACCAG 19091 ||||| || ||||| ||||| ||||| ||||| |||| | ||| |||||| | | Sbjct 35292 ATGCTTAACATCACACCAAATTTTGCACAGGAACGCGCGCTGAACATGCTGCGCCGTGAC 35351 Query 19092 TGGAAACAGCATCGCA-CGTACCTGATGTATGCACCCACTGGCTCTGGCAAAACTGGTCT 19150 ||||| | | || | ||| | |||||||| || || ||| |||||||| || || Sbjct 35352 TGGAAGGCGTA-CGAATCGTTCATGATGTATATGCCGACCGGCAGCGGCAAAACCGGGCT 35410 Query 19151 TGCAGCATTCGTCACTGCCGGAATGGTTGAACGTGGTATGCGGGTGATGTTTGTCTGTCC 19210 || || || || | | || |||| ||||||||||| || |||||||| || Sbjct 35411 GGCTGCTTTTGTTGCAGATGGTCTGGTGAGCCGTGGTATGCGCGTTCTGTTTGTCGCCCC 35470 Query 19211 GTACACCATCCTGCTGAACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGA 19270 |||||||||||| | || ||||| || | || || | | || || | ||| || Sbjct 35471 TTACACCATCCTGATCAATCAGACCGCACAGCGCTTTGCTCAGTATGGCCTTCCGGAAGA 35530 Query 19271 AGAAATCAGTTTTGTATGGCGTGATCACCCTAACTATGACCCGTCACGACTGATTCAGAT 19330 | ||||| ||| | |||||||||||||| ||||||||||| | | ||| ||||| Sbjct 35531 CCAGATCAGCTTTATCTGGCGTGATCACCCGAACTATGACCCCAGCCTGCAGATCCAGAT 35590 Query 19331 TGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCAT 19390 |||||| ||||||||||||||||| || || || || | | |||||||||||||| || Sbjct 35591 TGCCAGCGCCGACACGCTGATCCGCCGGGAATTCCCGCAGGATATCGATCTGCTGATTAT 35650 Query 19391 CGATGAAGCACACATG---AAGCGTCG-----TGCGTTAC-TTGAGGTTATC----CGGG 19437 ||| ||||| || || || || || || | ||||| ||| ||| Sbjct 35651 CGACGAAGCCCATCTGCGCAAACGCCGCATTCTGAAAGAGATTGAGCGGATCACCACGGA 35710 Query 19438 A--CAAAGATATCAGGGTTCTTGGGCTTTCCGGCACCCCGTTCGCAGCCTGGATGGGGAA 19495 | ||||| | |||| | || || ||||| |||||||| || | | ||||||| Sbjct 35711 AACCAAAGCGAA---GGTTATAGGCCTGTCCGGAACCCCGTTTTCACCTTTCCTGGGGAA 35767 Query 19496 GTACTACGAATGCCTGATCAAGCCTACAACGATTCGTGAACTTATTCAGCGTGGTGATCT 19555 |||||| | |||||||||| || || || || | || ||||| |||||||||||||| Sbjct 35768 TTACTACCAGCGCCTGATCAAACCGACCACCATCGGCGAGCTTATCCAGCGTGGTGATCT 35827 Query 19556 GAGCGATTATGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAAAACCA--GT 19613 ||| |||| ||||| | |||||| ||| ||| |||||| ||||| || || | | Sbjct 35828 GAGTAATTACGAGTTCTATGCCCCGACAAAGCCGGATCTGAAAGGCGTTAAGACGAAAGC 35887 Query 19614 AACACCGTATT-TGGACGGGATTACAACGAGGAACAGCTCGCATCCATCATGGGGAGTTC 19672 | | | | ||| | || ||| |||||| |||| | || |||||| | | || Sbjct 35888 GTCGATGGAGTATGGCAGCGACTACGACGAGGCACAGTTGGCTGAAATCATGTGCGGATC 35947 Query 19673 GGATCTGGTTGGCGATATCGTCAGCAACTGGCTTGAGAATGGCGAGGATTTACCGACGAT 19732 ||| ||||| ||||| || ||| |||||||| || || |||| | ||||| | Sbjct 35948 GGAGCTGGTCGGCGACATTGTCGATAACTGGCTGCGTAACGGGCAGGACCTTCCGACAGT 36007 Query 19733 CTGCTTCTGCGTGAATGTGGCTCATGCGAACTTTGTTACCCGTGAGTTTTTACAGTCTGG 19792 ||||| || ||| ||| || || |||| || || |||| | | || Sbjct 36008 GGCGTTCTGTGTCAATAAGGCCCACGCCAACTACGTCACGATGCAGTTCAACAAAGCGGG 36067 Query 19793 CATTGGCGCAGAGGTGATGACGGCAGATACCCCCCATGATGAACGACAGGACATCATTCG 19852 | | || ||||||||| ||| || || || || || |||||||| || || | Sbjct 36068 CGTGAATGCCGAGGTGATGGTGGCCGAAACGCCGCACGAAGAACGACAACTGATGATCCA 36127 Query 19853 CCGTTTTGAAGAGGGTGCGACCAAAATAATTGTCAACGTTGGCGTACTGGTTGCGGGATT 19912 ||| |||||| || ||||| ||||| ||| ||| ||| || |||||||| ||||| || Sbjct 36128 CCGCTTTGAAACTGGCGCGACAAAAATCATTATCAGCGTCGGTGTACTGGTGGCGGGCTT 36187 Query 19913 TGACAGCGATGTTCGCTGCCTGATCTACGCCCGTCCGACCAAATCAGAAATCCGCTGGTT 19972 || || || ||||||||| |||| |||||||| || |||||| ||||| |||||||| Sbjct 36188 CGATAGTGACGTTCGCTGCGTGATTTACGCCCGCCCTACCAAAAGCGAAATTCGCTGGTT 36247 Query 19973 GCAGTGCA-TCGGGAGAGCGTTACGTACTGCGTCTGGTAAAAAACGCGCATTGATTTTCG 20031 |||| ||| | ||| | | | || ||||| | || ||| | | | || |||| Sbjct 36248 GCAG-GCACTGGGGCGTGGCCTTCGCACTGCACCAGGCAAAGATGCCTGTCTCATCTTCG 36306 Query 20032 ACCATTCCGGCACGGTTCATCGGCTGGGCTTCCCCGAGGATATCGAGTATGACGAACTTC 20091 | || ||||| || ||||| ||||| || || || | ||| ||||| ||| || | Sbjct 36307 ATCACAGTGGCACCGTCCATCGCCTGGGATTTCCTGACGCTATTGAGTACAGCGACCTCC 36366 Query 20092 CGGGAAAAAATGACGGAATGAAAGCGTCTGCTGGC--GGGAG-TGAGGTTAAGGCTGAGA 20148 || |||| || || ||||||| | | |||| | | || ||||| | || || | Sbjct 36367 CGTCGAAAAGCGATGGCATGAAAGAGGCCGCTGCCCGTGTAGCTGAGGATCGGGAGGAAA 36426 Query 20149 AACTTCCCAGGGAATGCCCCAAATGCCACTTCATGAAGCCTGCTGGCGTGCATATGTGTC 20208 ||||||| | ||||||| |||||| |||||||| ||||| || ||| | | || | Sbjct 36427 AACTTCCGAAAGAATGCCATGGATGCCATTTCATGAAACCTGCAGGGGTGTACGTCTGCC 36486 Query 20209 CCAAATGTGGATTTCGTCCTCTTGGTGGTGATGACGTGGCGACAGAT-CGCGATCGTAAG 20267 | |||||||| ||| || || | ||||| || || | || ||| ||| | || || Sbjct 36487 CGAAATGTGGTTTTAAGCCGCTGGTCGGTGAGGATGTTGAAACCGATACGC-AGCGGAA- 36544 Query 20268 CTTTC---ACGCGTCAACAAAGG-GAAACGCGAATACACCCGTGAGGAAAAACAGCGTTG 20323 | || | || |||| || || |||| | | |||||| ||| |||||| || Sbjct 36545 -TATCAAAAAGC-TCAAAAAGGGCGAAAAG-GGTTACACCAAAACGGACAAACAGTCCTG 36601 Query 20324 GTGGAGCGAGATCAAGGGGTATCAGAATTACCGCAACGCGACAGGTAAGCCACTGAGTGA 20383 |||||| ||||||| |||||| |||| ||| || || || | ||||| Sbjct 36602 GTGGAGTCAGATCAAATTTTATCAGCGCCACCGTGCATCGATGGGAAAACCTGTCAGTGA 36661 Query 20384 CGGATGGTGTGCTCATACCTAC 20405 || |||||||||||||||||| Sbjct 36662 TGGGTGGTGTGCTCATACCTAC 36683 Score = 295 bits (326), Expect = 3e-75 Identities = 357/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 22717 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 22776 ||||| || |||| ||||| | || |||||||| || ||||| || ||||| ||||| Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218 Query 22777 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTAAAA 22836 |||||| | ||| |||| ||||| || |||||||| | || | || | | |||||| Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278 Query 22837 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 22896 || || |||||||||||||| ||||| |||||| | | |||||||| || || | || Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338 Query 22897 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 22956 |||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| |||| Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398 Query 22957 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 23016 || ||||||||||| || || ||||| ||||| || | ||| |||||| | || Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458 Query 23017 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 23076 ||||| ||||| ||||||||||||||||||||||||| | || | || ||||||||| Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518 Query 23077 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 23135 |||| ||| |||||| |||| | ||| ||| ||||| | |||| Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568 Query 23136 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 23195 |||||||| |||||||| | | ||||| || |||||||||| || | | ||| ||| Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628 Query 23196 TAA 23198 ||| Sbjct 629 TAA 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194598993739888