Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_019442.1
Length=60523
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 500 3e-137
seq9686 453 4e-123
>seq4723
Length=43540
Score = 500 bits (554), Expect = 3e-137
Identities = 522/685 (76%), Gaps = 0/685 (0%)
Strand=Plus/Minus
Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315
||||||||| ||| || || || ||||| || || || || ||||| || ||||||||
Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220
Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 10375
|||||||||||||| |||||| |||||||| || || || || ||||||| |||||
Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160
Query 10376 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 10435
|| | |||||| || ||||||||||||||||| ||||| ||| ||||||||| ||| |
Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100
Query 10436 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 10495
|||| |||||||||| | || |||||||||||||| || | |||||| || ||||||||
Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040
Query 10496 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10555
|||||||| ||||||||||||||||||||| || |||||||| || || || || ||
Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980
Query 10556 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10615
||| ||||| | ||||| ||||||||||| |||||||| | ||||| || || |
Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920
Query 10616 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10675
|| |||| || ||||||||| | | | || ||||| |||| || || || ||
Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860
Query 10676 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10735
|||| |||| || |||||||| |||||||| |||||||||||||| | ||||| || ||
Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800
Query 10736 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10795
||||| |||||||||||||||||||| |||||||| | || | ||| || | |||||
Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740
Query 10796 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10855
|| || || | || || ||| ||||| || || || || || ||||| | |||| |
Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680
Query 10856 GTGCCATCCATCATCGCCCTGGTCGAGGCTGGTAATATCCACGCCAGTTCGCTGGAGAAT 10915
||||| | |||||||| || |||| | || | || | ||| || || || ||
Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620
Query 10916 AATTTCTGGTGTCATGACACGGCCT 10940
|||||| ||||||||| ||||||
Sbjct 1619 AATTTCAGGTGTCATGCTGCGGCCT 1595
Score = 111 bits (122), Expect = 6e-20
Identities = 479/736 (65%), Gaps = 35/736 (5%)
Strand=Plus/Minus
Query 111 CATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAG--TGCCCCATCTGTGAT 168
||||||| ||| ||||| | | | ||||| ||| ||| || |||||||| |||||
Sbjct 8131 CATCCATTTACCGTAAACCTGGAATACCAT-CTG-CGCATCAGCATGCCCCATTTGTGAC 8074
Query 169 GCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGTGAC 228
||||| |||| ||||| || ||||| | || | |||||| || || || || | |||
Sbjct 8073 GCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGTGTGCCTGGAC 8014
Query 229 TGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCTCCG 288
||||| | || | | || || || || | ||||| ||||| |||||||| || |
Sbjct 8013 TGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTACTGCTGTGTCCCATGTTTGTCTG 7954
Query 289 ATGGAGCTTACCGCGTAGTTAATACCAGCCTTGT--GATTCTTGCG--AAC-GATTTGCG 343
| || || | | ||| | || || | | | ||| | | ||| || |
Sbjct 7953 ACAGAATCGACAGTGAAGTGATCGCC-GCATACTCCGGTTCGGGAGGTAACAGAA----G 7899
Query 344 GACAGAAA-ACAAAAGTGCACTCGTGCAAAATTGTTCTT----CCGTACTCGCGTAATTG 398
|| ||||| ||||| || || |||||| || | ||| || || || || | ||
Sbjct 7898 GA-AGAAACACAAAGGTACATTCGTGC----TTTTCCTTTTTACCATATTCCCGCAGGTG 7844
Query 399 AACAGTGATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTC 458
|||| | | |||| | | | ||| || | | | | || |||| || || ||
Sbjct 7843 AACATCCAGCACGTGCTCCTTTCCAAGTCGTGATATCTCCAGTTGACTTTTGAGCGCCTC 7784
Query 459 AATTGCTGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGT 518
||||| ||| | || |||||||||| ||| || || || | ||||||||| | |||
Sbjct 7783 TATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGGAACCGT 7724
Query 519 AAAATCACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGAT 578
||| | | | || | || |||| | | | ||||| ||| ||||||||||||
Sbjct 7723 AAATTTATCC---TTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAGGTCGAT 7667
Query 579 ATCCTCCCATGC--AAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACT 636
||||||||| | ||| || ||| || || ||| | |||||| | |||| |
Sbjct 7666 ATCCTCCCAGCCTAAAGAGC-ACAA-CTCCCCAGGTCTAAGTCCTGTATAGACAGAAAGC 7609
Query 637 GTCCAGAGGTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCT 696
| ||| || ||||| | ||| || | |||| ||||| ||||| | | ||||| ||
Sbjct 7608 GCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGATGAGCCTGACGAACTCCTCC 7549
Query 697 CTGGTCAGTGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGG 756
|| | || || || || || | || | ||| ||||||| ||| || |||||
Sbjct 7548 CTTGAAAGCGGGTCAGGAACAACTCGCGACTCCCTGAGCGGTGATATGCCTTTGAACGGA 7489
Query 757 TTTTTCTCCAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCG-GCTGTTGTTGTCA 814
|| | || | ||| || || || | |||| ||| |||| | || | | | | ||||
Sbjct 7488 TTATCATCGATATAGCCATTCTCCATGCCAAA-CTGAAACACTGCGTACAGGT-TGGTCA 7431
Query 815 TGTAATAGTTCACTGT 830
|||| | |||||||||
Sbjct 7430 TGTAGTTGTTCACTGT 7415
Score = 91.5 bits (100), Expect = 6e-14
Identities = 90/115 (78%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 14703 TCCTGCCAGTGTTGCCCGTTCTCACGCCGTTCTCGCTCTCGCGCGGGGATA-CTCTCTCA 14761
||| ||||||||||||||||| |||||| | |||||||| || |||| || | |||||
Sbjct 42447 TCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTAGCCTTCTCA 42388
Query 14762 TCGACCGGATCGCACCCGATGATACAGCACGTTTACGTGTAGGGGTCTAAACAGG 14816
| |||||||||| | | |||||| | | ||| | || ||||||||||||||
Sbjct 42387 CCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAACAGG 42333
>seq9686
Length=37809
Score = 453 bits (502), Expect = 4e-123
Identities = 955/1402 (68%), Gaps = 38/1402 (3%)
Strand=Plus/Plus
Query 19534 ATGCTGAAAATCACCCCAAACTTTGCTCAGGAGCGCGGTTTAAACCAGCTGCGGCACCAG 19593
||||| || ||||| ||||| ||||| ||||| |||| | ||| |||||| | |
Sbjct 35292 ATGCTTAACATCACACCAAATTTTGCACAGGAACGCGCGCTGAACATGCTGCGCCGTGAC 35351
Query 19594 TGGAAACAGCATCGCA-CGTACCTGATGTATGCACCCACTGGCTCTGGCAAAACTGGTCT 19652
||||| | | || | ||| | |||||||| || || ||| |||||||| || ||
Sbjct 35352 TGGAAGGCGTA-CGAATCGTTCATGATGTATATGCCGACCGGCAGCGGCAAAACCGGGCT 35410
Query 19653 TGCAGCATTCGTCACTGCCGGAATGGTTGAACGTGGTATGCGGGTGATGTTTGTCTGTCC 19712
|| || || || | | || |||| ||||||||||| || |||||||| ||
Sbjct 35411 GGCTGCTTTTGTTGCAGATGGTCTGGTGAGCCGTGGTATGCGCGTTCTGTTTGTCGCCCC 35470
Query 19713 GTACACCATCCTGCTGAACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGA 19772
|||||||||||| | || ||||| || | || || | | || || | ||| ||
Sbjct 35471 TTACACCATCCTGATCAATCAGACCGCACAGCGCTTTGCTCAGTATGGCCTTCCGGAAGA 35530
Query 19773 AGAAATCAGTTTTGTATGGCGTGATCACCCTAACTATGACCCGTCACGACTGATTCAGAT 19832
| ||||| ||| | |||||||||||||| ||||||||||| | | ||| |||||
Sbjct 35531 CCAGATCAGCTTTATCTGGCGTGATCACCCGAACTATGACCCCAGCCTGCAGATCCAGAT 35590
Query 19833 TGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCAT 19892
|||||| ||||||||||||||||| || || || || | | |||||||||||||| ||
Sbjct 35591 TGCCAGCGCCGACACGCTGATCCGCCGGGAATTCCCGCAGGATATCGATCTGCTGATTAT 35650
Query 19893 CGATGAAGCACACATG---AAGCGTCG-----TGCGTTAC-TTGAGGTTATC----CGGG 19939
||| ||||| || || || || || || | ||||| ||| |||
Sbjct 35651 CGACGAAGCCCATCTGCGCAAACGCCGCATTCTGAAAGAGATTGAGCGGATCACCACGGA 35710
Query 19940 A--CAAAGATATCAGGGTTCTTGGGCTTTCCGGCACCCCGTTCGCAGCCTGGATGGGGAA 19997
| ||||| | |||| | || || ||||| |||||||| || | | |||||||
Sbjct 35711 AACCAAAGCGAA---GGTTATAGGCCTGTCCGGAACCCCGTTTTCACCTTTCCTGGGGAA 35767
Query 19998 GTACTACGAATGCCTGATCAAGCCTACAACGATTCGTGAACTTATTCAGCGTGGTGATCT 20057
|||||| | |||||||||| || || || || | || ||||| ||||||||||||||
Sbjct 35768 TTACTACCAGCGCCTGATCAAACCGACCACCATCGGCGAGCTTATCCAGCGTGGTGATCT 35827
Query 20058 GAGCGATTATGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAAAACCA--GT 20115
||| |||| ||||| | |||||| ||| ||| |||||| ||||| || || | |
Sbjct 35828 GAGTAATTACGAGTTCTATGCCCCGACAAAGCCGGATCTGAAAGGCGTTAAGACGAAAGC 35887
Query 20116 AACACCGTATT-TGGACGGGATTACAACGAGGAACAGCTCGCATCCATCATGGGGAGTTC 20174
| | | | ||| | || ||| |||||| |||| | || |||||| | | ||
Sbjct 35888 GTCGATGGAGTATGGCAGCGACTACGACGAGGCACAGTTGGCTGAAATCATGTGCGGATC 35947
Query 20175 GGATCTGGTTGGCGATATCGTCAGCAACTGGCTTGAGAATGGCGAGGATTTACCGACGAT 20234
||| ||||| ||||| || ||| |||||||| || || |||| | ||||| |
Sbjct 35948 GGAGCTGGTCGGCGACATTGTCGATAACTGGCTGCGTAACGGGCAGGACCTTCCGACAGT 36007
Query 20235 CTGCTTCTGCGTGAATGTGGCTCATGCGAACTTTGTTACCCGTGAGTTTTTACAGTCTGG 20294
||||| || ||| ||| || || |||| || || |||| | | ||
Sbjct 36008 GGCGTTCTGTGTCAATAAGGCCCACGCCAACTACGTCACGATGCAGTTCAACAAAGCGGG 36067
Query 20295 CATTGGCGCAGAGGTGATGACGGCAGATACCCCCCATGATGAACGACAGGACATCATTCG 20354
| | || ||||||||| ||| || || || || || |||||||| || || |
Sbjct 36068 CGTGAATGCCGAGGTGATGGTGGCCGAAACGCCGCACGAAGAACGACAACTGATGATCCA 36127
Query 20355 CCGTTTTGAAGAGGGTGCGACCAAAATAATTGTCAACGTTGGCGTACTGGTTGCGGGATT 20414
||| |||||| || ||||| ||||| ||| ||| ||| || |||||||| ||||| ||
Sbjct 36128 CCGCTTTGAAACTGGCGCGACAAAAATCATTATCAGCGTCGGTGTACTGGTGGCGGGCTT 36187
Query 20415 TGACAGCGATGTTCGCTGCCTGATCTACGCCCGTCCGACCAAATCAGAAATCCGCTGGTT 20474
|| || || ||||||||| |||| |||||||| || |||||| ||||| ||||||||
Sbjct 36188 CGATAGTGACGTTCGCTGCGTGATTTACGCCCGCCCTACCAAAAGCGAAATTCGCTGGTT 36247
Query 20475 GCAGTGCA-TCGGGAGAGCGTTACGTACTGCGTCTGGTAAAAAACGCGCATTGATTTTCG 20533
|||| ||| | ||| | | | || ||||| | || ||| | | | || ||||
Sbjct 36248 GCAG-GCACTGGGGCGTGGCCTTCGCACTGCACCAGGCAAAGATGCCTGTCTCATCTTCG 36306
Query 20534 ACCATTCCGGCACGGTTCATCGGCTGGGCTTCCCCGAGGATATCGAGTATGACGAACTTC 20593
| || ||||| || ||||| ||||| || || || | ||| ||||| ||| || |
Sbjct 36307 ATCACAGTGGCACCGTCCATCGCCTGGGATTTCCTGACGCTATTGAGTACAGCGACCTCC 36366
Query 20594 CGGGAAAAAATGACGGAATGAAAGCGTCTGCTGGC--GGGAG-TGAGGTTAAGGCTGAGA 20650
|| |||| || || ||||||| | | |||| | | || ||||| | || || |
Sbjct 36367 CGTCGAAAAGCGATGGCATGAAAGAGGCCGCTGCCCGTGTAGCTGAGGATCGGGAGGAAA 36426
Query 20651 AACTTCCCAGGGAATGCCCCAAATGCCACTTCATGAAGCCTGCTGGCGTGCATATGTGTC 20710
||||||| | ||||||| |||||| |||||||| ||||| || ||| | | || |
Sbjct 36427 AACTTCCGAAAGAATGCCATGGATGCCATTTCATGAAACCTGCAGGGGTGTACGTCTGCC 36486
Query 20711 CCAAATGTGGATTTCGTCCTCTTGGTGGTGATGACGTGGCGACAGAT-CGCGATCGTAAG 20769
| |||||||| ||| || || | ||||| || || | || ||| ||| | || ||
Sbjct 36487 CGAAATGTGGTTTTAAGCCGCTGGTCGGTGAGGATGTTGAAACCGATACGC-AGCGGAA- 36544
Query 20770 CTTTC---ACGCGTCAACAAAGG-GAAACGCGAATACACCCGTGAGGAAAAACAGCGTTG 20825
| || | || |||| || || |||| | | |||||| ||| |||||| ||
Sbjct 36545 -TATCAAAAAGC-TCAAAAAGGGCGAAAAG-GGTTACACCAAAACGGACAAACAGTCCTG 36601
Query 20826 GTGGAGCGAGATCAAGGGGTATCAGAATTACCGCAACGCGACAGGTAAGCCACTGAGTGA 20885
|||||| ||||||| |||||| |||| ||| || || || | |||||
Sbjct 36602 GTGGAGTCAGATCAAATTTTATCAGCGCCACCGTGCATCGATGGGAAAACCTGTCAGTGA 36661
Query 20886 CGGATGGTGTGCTCATACCTAC 20907
|| ||||||||||||||||||
Sbjct 36662 TGGGTGGTGTGCTCATACCTAC 36683
Score = 295 bits (326), Expect = 3e-75
Identities = 357/483 (74%), Gaps = 11/483 (2%)
Strand=Plus/Plus
Query 23219 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 23278
||||| || |||| ||||| | || |||||||| || ||||| || ||||| |||||
Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218
Query 23279 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTAAAA 23338
|||||| | ||| |||| ||||| || |||||||| | || | || | | ||||||
Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278
Query 23339 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 23398
|| || |||||||||||||| ||||| |||||| | | |||||||| || || | ||
Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338
Query 23399 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 23458
|||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| ||||
Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398
Query 23459 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 23518
|| ||||||||||| || || ||||| ||||| || | ||| |||||| | ||
Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458
Query 23519 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 23578
||||| ||||| ||||||||||||||||||||||||| | || | || |||||||||
Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518
Query 23579 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 23637
|||| ||| |||||| |||| | ||| ||| ||||| | ||||
Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568
Query 23638 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 23697
|||||||| |||||||| | | ||||| || |||||||||| || | | ||| |||
Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628
Query 23698 TAA 23700
|||
Sbjct 629 TAA 631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193412648487530
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