Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq4723 500 3e-137 seq9686 453 4e-123 >seq4723 Length=43540 Score = 500 bits (554), Expect = 3e-137 Identities = 522/685 (76%), Gaps = 0/685 (0%) Strand=Plus/Minus Query 10256 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 10315 ||||||||| ||| || || || ||||| || || || || ||||| || |||||||| Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220 Query 10316 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 10375 |||||||||||||| |||||| |||||||| || || || || ||||||| ||||| Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160 Query 10376 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 10435 || | |||||| || ||||||||||||||||| ||||| ||| ||||||||| ||| | Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100 Query 10436 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 10495 |||| |||||||||| | || |||||||||||||| || | |||||| || |||||||| Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040 Query 10496 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10555 |||||||| ||||||||||||||||||||| || |||||||| || || || || || Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980 Query 10556 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10615 ||| ||||| | ||||| ||||||||||| |||||||| | ||||| || || | Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920 Query 10616 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10675 || |||| || ||||||||| | | | || ||||| |||| || || || || Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860 Query 10676 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10735 |||| |||| || |||||||| |||||||| |||||||||||||| | ||||| || || Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800 Query 10736 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10795 ||||| |||||||||||||||||||| |||||||| | || | ||| || | ||||| Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740 Query 10796 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10855 || || || | || || ||| ||||| || || || || || ||||| | |||| | Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680 Query 10856 GTGCCATCCATCATCGCCCTGGTCGAGGCTGGTAATATCCACGCCAGTTCGCTGGAGAAT 10915 ||||| | |||||||| || |||| | || | || | ||| || || || || Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620 Query 10916 AATTTCTGGTGTCATGACACGGCCT 10940 |||||| ||||||||| |||||| Sbjct 1619 AATTTCAGGTGTCATGCTGCGGCCT 1595 Score = 111 bits (122), Expect = 6e-20 Identities = 479/736 (65%), Gaps = 35/736 (5%) Strand=Plus/Minus Query 111 CATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAG--TGCCCCATCTGTGAT 168 ||||||| ||| ||||| | | | ||||| ||| ||| || |||||||| ||||| Sbjct 8131 CATCCATTTACCGTAAACCTGGAATACCAT-CTG-CGCATCAGCATGCCCCATTTGTGAC 8074 Query 169 GCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGTGAC 228 ||||| |||| ||||| || ||||| | || | |||||| || || || || | ||| Sbjct 8073 GCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGTGTGCCTGGAC 8014 Query 229 TGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCTCCG 288 ||||| | || | | || || || || | ||||| ||||| |||||||| || | Sbjct 8013 TGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTACTGCTGTGTCCCATGTTTGTCTG 7954 Query 289 ATGGAGCTTACCGCGTAGTTAATACCAGCCTTGT--GATTCTTGCG--AAC-GATTTGCG 343 | || || | | ||| | || || | | | ||| | | ||| || | Sbjct 7953 ACAGAATCGACAGTGAAGTGATCGCC-GCATACTCCGGTTCGGGAGGTAACAGAA----G 7899 Query 344 GACAGAAA-ACAAAAGTGCACTCGTGCAAAATTGTTCTT----CCGTACTCGCGTAATTG 398 || ||||| ||||| || || |||||| || | ||| || || || || | || Sbjct 7898 GA-AGAAACACAAAGGTACATTCGTGC----TTTTCCTTTTTACCATATTCCCGCAGGTG 7844 Query 399 AACAGTGATCTGATGCTGCCTGCTAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTC 458 |||| | | |||| | | | ||| || | | | | || |||| || || || Sbjct 7843 AACATCCAGCACGTGCTCCTTTCCAAGTCGTGATATCTCCAGTTGACTTTTGAGCGCCTC 7784 Query 459 AATTGCTGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCGGTCTTTGGTAGCGT 518 ||||| ||| | || |||||||||| ||| || || || | ||||||||| | ||| Sbjct 7783 TATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGGAACCGT 7724 Query 519 AAAATCACCTATTTTTGTAAAATTTCGTCGCACTGTTATCGTGCCAGCTTTCAGGTCGAT 578 ||| | | | || | || |||| | | | ||||| ||| |||||||||||| Sbjct 7723 AAATTTATCC---TTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAGGTCGAT 7667 Query 579 ATCCTCCCATGC--AAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACT 636 ||||||||| | ||| || ||| || || ||| | |||||| | |||| | Sbjct 7666 ATCCTCCCAGCCTAAAGAGC-ACAA-CTCCCCAGGTCTAAGTCCTGTATAGACAGAAAGC 7609 Query 637 GTCCAGAGGTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCT 696 | ||| || ||||| | ||| || | |||| ||||| ||||| | | ||||| || Sbjct 7608 GCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGATGAGCCTGACGAACTCCTCC 7549 Query 697 CTGGTCAGTGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGG 756 || | || || || || || | || | ||| ||||||| ||| || ||||| Sbjct 7548 CTTGAAAGCGGGTCAGGAACAACTCGCGACTCCCTGAGCGGTGATATGCCTTTGAACGGA 7489 Query 757 TTTTTCTCCAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCG-GCTGTTGTTGTCA 814 || | || | ||| || || || | |||| ||| |||| | || | | | | |||| Sbjct 7488 TTATCATCGATATAGCCATTCTCCATGCCAAA-CTGAAACACTGCGTACAGGT-TGGTCA 7431 Query 815 TGTAATAGTTCACTGT 830 |||| | ||||||||| Sbjct 7430 TGTAGTTGTTCACTGT 7415 Score = 91.5 bits (100), Expect = 6e-14 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 14703 TCCTGCCAGTGTTGCCCGTTCTCACGCCGTTCTCGCTCTCGCGCGGGGATA-CTCTCTCA 14761 ||| ||||||||||||||||| |||||| | |||||||| || |||| || | ||||| Sbjct 42447 TCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTAGCCTTCTCA 42388 Query 14762 TCGACCGGATCGCACCCGATGATACAGCACGTTTACGTGTAGGGGTCTAAACAGG 14816 | |||||||||| | | |||||| | | ||| | || |||||||||||||| Sbjct 42387 CCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAACAGG 42333 >seq9686 Length=37809 Score = 453 bits (502), Expect = 4e-123 Identities = 955/1402 (68%), Gaps = 38/1402 (3%) Strand=Plus/Plus Query 19534 ATGCTGAAAATCACCCCAAACTTTGCTCAGGAGCGCGGTTTAAACCAGCTGCGGCACCAG 19593 ||||| || ||||| ||||| ||||| ||||| |||| | ||| |||||| | | Sbjct 35292 ATGCTTAACATCACACCAAATTTTGCACAGGAACGCGCGCTGAACATGCTGCGCCGTGAC 35351 Query 19594 TGGAAACAGCATCGCA-CGTACCTGATGTATGCACCCACTGGCTCTGGCAAAACTGGTCT 19652 ||||| | | || | ||| | |||||||| || || ||| |||||||| || || Sbjct 35352 TGGAAGGCGTA-CGAATCGTTCATGATGTATATGCCGACCGGCAGCGGCAAAACCGGGCT 35410 Query 19653 TGCAGCATTCGTCACTGCCGGAATGGTTGAACGTGGTATGCGGGTGATGTTTGTCTGTCC 19712 || || || || | | || |||| ||||||||||| || |||||||| || Sbjct 35411 GGCTGCTTTTGTTGCAGATGGTCTGGTGAGCCGTGGTATGCGCGTTCTGTTTGTCGCCCC 35470 Query 19713 GTACACCATCCTGCTGAACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGA 19772 |||||||||||| | || ||||| || | || || | | || || | ||| || Sbjct 35471 TTACACCATCCTGATCAATCAGACCGCACAGCGCTTTGCTCAGTATGGCCTTCCGGAAGA 35530 Query 19773 AGAAATCAGTTTTGTATGGCGTGATCACCCTAACTATGACCCGTCACGACTGATTCAGAT 19832 | ||||| ||| | |||||||||||||| ||||||||||| | | ||| ||||| Sbjct 35531 CCAGATCAGCTTTATCTGGCGTGATCACCCGAACTATGACCCCAGCCTGCAGATCCAGAT 35590 Query 19833 TGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCAT 19892 |||||| ||||||||||||||||| || || || || | | |||||||||||||| || Sbjct 35591 TGCCAGCGCCGACACGCTGATCCGCCGGGAATTCCCGCAGGATATCGATCTGCTGATTAT 35650 Query 19893 CGATGAAGCACACATG---AAGCGTCG-----TGCGTTAC-TTGAGGTTATC----CGGG 19939 ||| ||||| || || || || || || | ||||| ||| ||| Sbjct 35651 CGACGAAGCCCATCTGCGCAAACGCCGCATTCTGAAAGAGATTGAGCGGATCACCACGGA 35710 Query 19940 A--CAAAGATATCAGGGTTCTTGGGCTTTCCGGCACCCCGTTCGCAGCCTGGATGGGGAA 19997 | ||||| | |||| | || || ||||| |||||||| || | | ||||||| Sbjct 35711 AACCAAAGCGAA---GGTTATAGGCCTGTCCGGAACCCCGTTTTCACCTTTCCTGGGGAA 35767 Query 19998 GTACTACGAATGCCTGATCAAGCCTACAACGATTCGTGAACTTATTCAGCGTGGTGATCT 20057 |||||| | |||||||||| || || || || | || ||||| |||||||||||||| Sbjct 35768 TTACTACCAGCGCCTGATCAAACCGACCACCATCGGCGAGCTTATCCAGCGTGGTGATCT 35827 Query 20058 GAGCGATTATGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAAAACCA--GT 20115 ||| |||| ||||| | |||||| ||| ||| |||||| ||||| || || | | Sbjct 35828 GAGTAATTACGAGTTCTATGCCCCGACAAAGCCGGATCTGAAAGGCGTTAAGACGAAAGC 35887 Query 20116 AACACCGTATT-TGGACGGGATTACAACGAGGAACAGCTCGCATCCATCATGGGGAGTTC 20174 | | | | ||| | || ||| |||||| |||| | || |||||| | | || Sbjct 35888 GTCGATGGAGTATGGCAGCGACTACGACGAGGCACAGTTGGCTGAAATCATGTGCGGATC 35947 Query 20175 GGATCTGGTTGGCGATATCGTCAGCAACTGGCTTGAGAATGGCGAGGATTTACCGACGAT 20234 ||| ||||| ||||| || ||| |||||||| || || |||| | ||||| | Sbjct 35948 GGAGCTGGTCGGCGACATTGTCGATAACTGGCTGCGTAACGGGCAGGACCTTCCGACAGT 36007 Query 20235 CTGCTTCTGCGTGAATGTGGCTCATGCGAACTTTGTTACCCGTGAGTTTTTACAGTCTGG 20294 ||||| || ||| ||| || || |||| || || |||| | | || Sbjct 36008 GGCGTTCTGTGTCAATAAGGCCCACGCCAACTACGTCACGATGCAGTTCAACAAAGCGGG 36067 Query 20295 CATTGGCGCAGAGGTGATGACGGCAGATACCCCCCATGATGAACGACAGGACATCATTCG 20354 | | || ||||||||| ||| || || || || || |||||||| || || | Sbjct 36068 CGTGAATGCCGAGGTGATGGTGGCCGAAACGCCGCACGAAGAACGACAACTGATGATCCA 36127 Query 20355 CCGTTTTGAAGAGGGTGCGACCAAAATAATTGTCAACGTTGGCGTACTGGTTGCGGGATT 20414 ||| |||||| || ||||| ||||| ||| ||| ||| || |||||||| ||||| || Sbjct 36128 CCGCTTTGAAACTGGCGCGACAAAAATCATTATCAGCGTCGGTGTACTGGTGGCGGGCTT 36187 Query 20415 TGACAGCGATGTTCGCTGCCTGATCTACGCCCGTCCGACCAAATCAGAAATCCGCTGGTT 20474 || || || ||||||||| |||| |||||||| || |||||| ||||| |||||||| Sbjct 36188 CGATAGTGACGTTCGCTGCGTGATTTACGCCCGCCCTACCAAAAGCGAAATTCGCTGGTT 36247 Query 20475 GCAGTGCA-TCGGGAGAGCGTTACGTACTGCGTCTGGTAAAAAACGCGCATTGATTTTCG 20533 |||| ||| | ||| | | | || ||||| | || ||| | | | || |||| Sbjct 36248 GCAG-GCACTGGGGCGTGGCCTTCGCACTGCACCAGGCAAAGATGCCTGTCTCATCTTCG 36306 Query 20534 ACCATTCCGGCACGGTTCATCGGCTGGGCTTCCCCGAGGATATCGAGTATGACGAACTTC 20593 | || ||||| || ||||| ||||| || || || | ||| ||||| ||| || | Sbjct 36307 ATCACAGTGGCACCGTCCATCGCCTGGGATTTCCTGACGCTATTGAGTACAGCGACCTCC 36366 Query 20594 CGGGAAAAAATGACGGAATGAAAGCGTCTGCTGGC--GGGAG-TGAGGTTAAGGCTGAGA 20650 || |||| || || ||||||| | | |||| | | || ||||| | || || | Sbjct 36367 CGTCGAAAAGCGATGGCATGAAAGAGGCCGCTGCCCGTGTAGCTGAGGATCGGGAGGAAA 36426 Query 20651 AACTTCCCAGGGAATGCCCCAAATGCCACTTCATGAAGCCTGCTGGCGTGCATATGTGTC 20710 ||||||| | ||||||| |||||| |||||||| ||||| || ||| | | || | Sbjct 36427 AACTTCCGAAAGAATGCCATGGATGCCATTTCATGAAACCTGCAGGGGTGTACGTCTGCC 36486 Query 20711 CCAAATGTGGATTTCGTCCTCTTGGTGGTGATGACGTGGCGACAGAT-CGCGATCGTAAG 20769 | |||||||| ||| || || | ||||| || || | || ||| ||| | || || Sbjct 36487 CGAAATGTGGTTTTAAGCCGCTGGTCGGTGAGGATGTTGAAACCGATACGC-AGCGGAA- 36544 Query 20770 CTTTC---ACGCGTCAACAAAGG-GAAACGCGAATACACCCGTGAGGAAAAACAGCGTTG 20825 | || | || |||| || || |||| | | |||||| ||| |||||| || Sbjct 36545 -TATCAAAAAGC-TCAAAAAGGGCGAAAAG-GGTTACACCAAAACGGACAAACAGTCCTG 36601 Query 20826 GTGGAGCGAGATCAAGGGGTATCAGAATTACCGCAACGCGACAGGTAAGCCACTGAGTGA 20885 |||||| ||||||| |||||| |||| ||| || || || | ||||| Sbjct 36602 GTGGAGTCAGATCAAATTTTATCAGCGCCACCGTGCATCGATGGGAAAACCTGTCAGTGA 36661 Query 20886 CGGATGGTGTGCTCATACCTAC 20907 || |||||||||||||||||| Sbjct 36662 TGGGTGGTGTGCTCATACCTAC 36683 Score = 295 bits (326), Expect = 3e-75 Identities = 357/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 23219 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 23278 ||||| || |||| ||||| | || |||||||| || ||||| || ||||| ||||| Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218 Query 23279 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTAAAA 23338 |||||| | ||| |||| ||||| || |||||||| | || | || | | |||||| Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278 Query 23339 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 23398 || || |||||||||||||| ||||| |||||| | | |||||||| || || | || Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338 Query 23399 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 23458 |||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| |||| Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398 Query 23459 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 23518 || ||||||||||| || || ||||| ||||| || | ||| |||||| | || Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458 Query 23519 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 23578 ||||| ||||| ||||||||||||||||||||||||| | || | || ||||||||| Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518 Query 23579 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 23637 |||| ||| |||||| |||| | ||| ||| ||||| | |||| Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568 Query 23638 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 23697 |||||||| |||||||| | | ||||| || |||||||||| || | | ||| ||| Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628 Query 23698 TAA 23700 ||| Sbjct 629 TAA 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193412648487530