Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5580 199 7e-46 >seq5580 Length=7482 Score = 199 bits (220), Expect = 7e-46 Identities = 483/724 (67%), Gaps = 13/724 (2%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || |||||| | ||||||||||| || ||||| || || || || ||||| ||| Sbjct 5335 TGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCC 5394 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCT-GTTCCAGCAG 47958 || ||| ||| ||||| | || || | | || || | | |||| | || Sbjct 5395 ATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCT-TG---GGACATTGAAGTTCGACCAA 5450 Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | | || |||||| |||| ||||| | | ||| | ||||||||| | | Sbjct 5451 GAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCAT 5510 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 || || || ||||| | || | || || | |||||| ||| || || | | || Sbjct 5511 GGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGAT 5570 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||| ||||||| | | |||||||||| || || ||| || | | ||| || Sbjct 5571 TTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTG---TACATAAGGCAAGC 5627 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||| || | ||||| || ||||| || |||||| ||||||| || ||||| || Sbjct 5628 AAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGG 5687 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || |||| || ||||||||||| | || |||||||||||||| || || || Sbjct 5688 CATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACC 5747 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || || || ||| ||| | ||| | ||| || | ||||| |||||||| Sbjct 5748 CTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATCCA 5807 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || ||||| || ||||||||||| | || || | || || || || ||||| || Sbjct 5808 TTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAG 5867 Query 48376 CTTCTTGCACTCA-CCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | ||| |||| | | | || | ||| || || | || ||||| || | Sbjct 5868 CATCTGTTTCTCATCAGGAGATCG-GATATAAGTGTCGATTAAAAGTGAATACATTTCGG 5926 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 | || | || || || || |||||||| |||||||| | || || ||||||| Sbjct 5927 AATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCA 5986 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 ||||| || |||| ||||| || || |||||||| || ||||| || || ||||||| Sbjct 5987 CTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGA 6046 Query 48555 AGGC 48558 | || Sbjct 6047 AAGC 6050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930826826223360