Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 199 7e-46
>seq5580
Length=7482
Score = 199 bits (220), Expect = 7e-46
Identities = 483/724 (67%), Gaps = 13/724 (2%)
Strand=Plus/Plus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
||||| || |||||| | ||||||||||| || ||||| || || || || ||||| |||
Sbjct 5335 TGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCC 5394
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCT-GTTCCAGCAG 47958
|| ||| ||| ||||| | || || | | || || | | |||| | ||
Sbjct 5395 ATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCT-TG---GGACATTGAAGTTCGACCAA 5450
Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
| | || |||||| |||| ||||| | | ||| | ||||||||| | |
Sbjct 5451 GAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCAT 5510
Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
|| || || ||||| | || | || || | |||||| ||| || || | | ||
Sbjct 5511 GGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGAT 5570
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135
||| ||||||| | | |||||||||| || || ||| || | | ||| ||
Sbjct 5571 TTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTG---TACATAAGGCAAGC 5627
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
||| || | ||||| || ||||| || |||||| ||||||| || ||||| ||
Sbjct 5628 AAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGG 5687
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
||| | || |||| || ||||||||||| | || |||||||||||||| || || ||
Sbjct 5688 CATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACC 5747
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315
||| || || || || ||| ||| | ||| | ||| || | ||||| ||||||||
Sbjct 5748 CTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTCAGAGATCCA 5807
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375
|| ||||| || ||||||||||| | || || | || || || || ||||| ||
Sbjct 5808 TTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAG 5867
Query 48376 CTTCTTGCACTCA-CCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434
| ||| |||| | | | || | ||| || || | || ||||| || |
Sbjct 5868 CATCTGTTTCTCATCAGGAGATCG-GATATAAGTGTCGATTAAAAGTGAATACATTTCGG 5926
Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494
| || | || || || || |||||||| |||||||| | || || |||||||
Sbjct 5927 AATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCA 5986
Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554
||||| || |||| ||||| || || |||||||| || ||||| || || |||||||
Sbjct 5987 CTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGA 6046
Query 48555 AGGC 48558
| ||
Sbjct 6047 AAGC 6050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930826826223360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |