Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5580 145 1e-29 >seq5580 Length=7482 Score = 145 bits (160), Expect = 1e-29 Identities = 328/480 (68%), Gaps = 25/480 (5%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| |||||||| ||||||||||| || || || || || || ||| ||| Sbjct 6058 ACGTTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAATGAAAACTTGGTGGAGCGAT 5999 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 | || ||||||||| || || ||||||||||| |||||||| ||||| | Sbjct 5998 TTGCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTTCCAGATTGCCATGG 5939 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACA-TTACAGACG-TCGC 25772 |||| | || || || ||||| | ||| | || || ||| ||| | || || | Sbjct 5938 AAAACATTCATTCCGAAATGTATTCA---CTTTTAAT--CG-ACACTTATATCCGATCTC 5885 Query 25773 C----GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | |||| | | |||||| | || ||||| | | || | | |||| ||||| Sbjct 5884 CTGATGAGAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAAGAAGAAGG 5825 Query 25829 CGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGC-GAGCGGCTG 25884 | |||||| | || |||||| ||| | | ||| | |||| || ||||| | Sbjct 5824 CCGATTGGGCCTTTAAATGGATCTCTGACAAC-ACAGC---AGGTTTTGCTGAGCGAGTC 5769 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 | |||||||| || || ||||| || |||||| || || ||||| |||| |||||| Sbjct 5768 ATCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGG 5709 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTT-CCAACGAGCTCATCAGCAGGGA 26003 || ||| ||| || |||||||| || ||||||| ||||||||||||| | || Sbjct 5708 CTGAAGAAGAGAGGTTTGATGCCCGGTCT-TACTTTTTCCAACGAGCTCATTTCGCGTGA 5650 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 ||||||| | || | |||||||| ||||| | |||| || ||| || ||||||| Sbjct 5649 CGAGGGTTTGCATTGCGATTTTGCTTGCCTTATGTACA---AACATTTGGTCAACAAACC 5593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928140863357760