Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_019522.1
Length=48454
Score E
Sequences producing significant alignments: (Bits) Value
seq9686 495 1e-135
seq4723 237 5e-58
>seq9686
Length=37809
Score = 495 bits (548), Expect = 1e-135
Identities = 724/1017 (71%), Gaps = 9/1017 (1%)
Strand=Plus/Plus
Query 22608 CCGCACCCATACACCAGATTAATTCCTGCGGACGAGATTTATGATTGGGTAGACAGGCAG 22667
||| | ||||||| ||| |||| ||||| ||||| || ||| ||| || | ||
Sbjct 4939 CCGAAACCATACATCAGCGTAATGCCTGCTGACGATGTTGGTGACTGGCTACGTTGTCAC 4998
Query 22668 ATCATCAGCGAAAGCGGAAACCTGTATAACCCGGATCATTTTCATCTGCATACGGCTGAC 22727
|| | || || ||| |||| | |||||| || || ||| | | | || ||
Sbjct 4999 ATTCTAAGTGATGACGGTGACCTCTTTAACCCAGACCACCAGCATTTACTTGAAGCGGAT 5058
Query 22728 AT-TGCGTTTATGTGGGCGTCATCAGCATTCGAGAAAAAAGGCCGGACGGTTCTTGGTCA 22786
| ||| || | |||||||| || |||||||| ||||| || | |||||||| ||
Sbjct 5059 CTGTGC-TTCCTCTGGGCGTCGAACGCTTTCGAGAAGAAAGGGCGTTCCGTTCTTGGGCA 5117
Query 22787 ATGCGAAGAAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGAT 22846
|||||||| |||||| || ||||||||||| || || | ||||| ||||| ||
Sbjct 5118 GGCGGAAGAAGTTGCGATGCGGGCAGGTGGATGGCAGAAAGCGCGCATGGAGCAGCAAAT 5177
Query 22847 GCATGAATGGTTCGGGAGAATCCCAGCA-TTCATTATCACGCTGGCCGCTGACTATTGCG 22905
| | ||||||||||| || | || ||| ||||| ||||||||||| || || || ||
Sbjct 5178 GTACGAATGGTTCGGCAGGGTGCC-GCAGTTCATCATCACGCTGGCAGCAGATTACTGTT 5236
Query 22906 CGGAGTGCTCCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCC 22965
|| | || ||||| |||| |||||||| ||| |||| || |||||||| |||||| |||
Sbjct 5237 CGCAATGTTCCGATCTGGAGTTCTGCGCCCTGTTAGAGCACGAGCTTTATCACATTAGCC 5296
Query 22966 ACGCTACTGATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGA 23025
| || || |||||||| || || ||||| || | | ||| || |||| ||||
Sbjct 5297 AGGCGACAGATGAATTTGGCGCGCCGAAGTTCACGCAGGAA---GGCATGCCAAAACTGA 5353
Query 23026 AAATGCGCGGTCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGCAAGCC 23085
| |||| || |||||||| || || || || || || ||||||||||||||||| ||||
Sbjct 5354 AGCTGCGTGGCCACGATGTGGAAGAGTTTGTCGGTGTGGTTCGCCGCTACGGTGCGAGCC 5413
Query 23086 GTGACGTGCAGGAAATGGTTGATGCGGCAAACAATAGGCCGGAAGTGGCTCACGTCGATG 23145
|||| |||||||||||| |||||||||| || | |||| || ||||| |||||
Sbjct 5414 GTGAAGTGCAGGAAATGATTGATGCGGCGAATCAGCCAGCGGAGGTTGCTCATCTCGATA 5473
Query 23146 TGGCGAGGGCATGCGGAACGTGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTATGA 23205
| || || || ||||| || ||| | | | |||| ||||| | ||||| || ||
Sbjct 5474 TTGCCAGAGCTTGCGGGACTTGCATGCTGCGACTGGCTTGAAACTG--GACTGTATAAGA 5531
Query 23206 CGAGTGGTGATTTATGGCGGTACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATT 23265
||| |||||||||||||| | | ||||| | || || | ||||| ||||||| |
Sbjct 5532 CGAATGGTGATTTATGGCTGCATTAAAACCTGATGTGAAAGCCTTCATCGTTCAGTTGCT 5591
Query 23266 AGCCTGCTTTGATACCCCATCTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGC 23325
|| |||| ||| || ||||| || |||||||| | ||| | ||||| ||||||||
Sbjct 5592 TGCGTGCTATGACACGCCATCGCAAGTGGTCGAGACTGTCCAAAAAGAGTTCGGCATCAA 5651
Query 23326 GATTACTCGGCAGCAGGTTGAATCTCATGACCCGACAAAGGCAAATGGTAGGGGGTTGGC 23385
||| || |||||||||| ||||| || || ||||| ||||| | |||| | | | ||
Sbjct 5652 GATCACCCGGCAGCAGGCCGAATCGCACGATCCGACCAAGGCCAGCGGTAAGACGCTCGC 5711
Query 23386 TCAAAAGTGGGTGGATATATTCAACTCTACGCGAGAGCGCTTCCAGAATGAAATCTCCGA 23445
| |||||| | || || ||| || | |||||||| ||||||| || |||| | |||
Sbjct 5712 GAAGAAGTGGATCGAGATGTTCCACGCGACGCGAGAACGCTTCCTGACCGAAACCAGCGA 5771
Query 23446 CATCCCCATAGCCAATAAAGCCTATCGTCTGCGCGTGCTGCAAAGAATGTCTACGTCGGC 23505
||| || || ||||| ||| ||||||| || |||||||| | | ||| |||| |
Sbjct 5772 CATTCCGATCGCCAACAAATCCTATCGCCTCCGCGTGCTTGACCGTATGGCTACCAAAAC 5831
Query 23506 CGAGAATATGAAAAACATGGGGATGACAGCTCAGCTACTGGAGCAGGCTGCTAAAGAGGT 23565
||| |||| ||| | |||| || ||||| | || ||||| || ||||||||
Sbjct 5832 CGAAGGGCTGAAGAACTTCTCCCTGACGGCGCAGCTGATTGAACAGGCCGCGAAAGAGGT 5891
Query 23566 TGGTGATGCGTATTCAAATAAGCAGAGGGTTGAACTAACGGGTAAGGATGGCGGCCC 23622
|| || || || | ||||||| || || || || |||||||||||||||||
Sbjct 5892 GGGCGACGCTTACACCAATAAGCTGAAAGTGGAGAGCACCGGTAAGGATGGCGGCCC 5948
>seq4723
Length=43540
Score = 237 bits (262), Expect = 5e-58
Identities = 335/464 (72%), Gaps = 10/464 (2%)
Strand=Plus/Plus
Query 11980 ATTTTAGATATGTGCTGTGGCAGCCGTATGTTCTGGCGTGACAAACGCGATCCGCGCGCG 12039
||||||||||||||||| || || ||||||||| ||||| | || |||||||
Sbjct 5313 ATTTTAGATATGTGCTGCGGGTCGCGCATGTTCTGGTTCGACAAGCAGGACGAGCGCGCG 5372
Query 12040 GTGTTTATGGATAACCGCAGCGAACAGCACACACTGTGCGACGGCCGCAGCCTGGTTATC 12099
|| || | |||| |||| ||| ||||| ||| |||||||| ||| |||||||||
Sbjct 5373 GTATTCAGTGATATCCGCGCCGAGCAGCATGAACTTTGCGACGGTCGCCAGCTGGTTATC 5432
Query 12100 TCTCCTGACATCATCGCTGACTTTCGCCAGCTCCCTTTTGCTGATGAGTCGTTTCCTGTT 12159
|| ||| | || ||||| || || || || ||||| ||| | | ||||||||
Sbjct 5433 AGCCCGGACCTTATTGCTGATTTCCGTGCCCTTCCATTTGCCGATCACACATTTCCTGTC 5492
Query 12160 GTCGTATTCGACCCTCCACATCTTGAAAGAGCAGGGCCAGAGGGC-TGGATGCGCAAAAA 12218
||||||||||| || ||||| || || | | ||| | | || |||||| | |||||
Sbjct 5493 GTCGTATTCGATCCCCCACACCTCGAGCGCG-TCGGCGATAACGCGTGGATGGGTAAAAA 5551
Query 12219 ATACGGCGTGTTGAATCCAAAG--ACATGGCGAGATGATTTGCGTGCTGGATTTGTCGAA 12276
||||| | | || ||||| |||||||| ||||| | ||||||||||| ||||
Sbjct 5552 GTACGGGCGGCTCAA--CAAAGAAACATGGCGCGATGACCTTCGTGCTGGATTCTCCGAA 5609
Query 12277 GCGTTCCGCGTGCTGCGACCTGATGGCGTGTTGATTTTCAAATGGAACGAAACACAGATT 12336
|| |||||||||||||| || | ||||| | || ||||||||||||||||| |||||
Sbjct 5610 GCATTCCGCGTGCTGCGGCCACACGGCGTACTCATCTTCAAATGGAACGAAACGCAGATC 5669
Query 12337 CCTGTCAGCCAGGTTTTATCACTGAC--AAGTGAGCGCCCGATTATCACGCAGCGAACAG 12394
|| || ||| | |||| | |||| | |||| || ||||| |||||| || |
Sbjct 5670 CCGGTAAGCAATATTTTGGCGTTGACCGACGTGA--AACCAGTTATCTGGCAGCGCACCG 5727
Query 12395 GGAAGGGTGACAAAACCCATTGGATTATTTTTGTTAAAGGTGGT 12438
| || ||||||||||| ||| | ||||| || |||||||||
Sbjct 5728 GAAAATCCGACAAAACCCACTGGGTGATTTTCGTCAAAGGTGGT 5771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 154819654280768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |