Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq9686 495 1e-135 seq4723 237 5e-58 >seq9686 Length=37809 Score = 495 bits (548), Expect = 1e-135 Identities = 724/1017 (71%), Gaps = 9/1017 (1%) Strand=Plus/Plus Query 22608 CCGCACCCATACACCAGATTAATTCCTGCGGACGAGATTTATGATTGGGTAGACAGGCAG 22667 ||| | ||||||| ||| |||| ||||| ||||| || ||| ||| || | || Sbjct 4939 CCGAAACCATACATCAGCGTAATGCCTGCTGACGATGTTGGTGACTGGCTACGTTGTCAC 4998 Query 22668 ATCATCAGCGAAAGCGGAAACCTGTATAACCCGGATCATTTTCATCTGCATACGGCTGAC 22727 || | || || ||| |||| | |||||| || || ||| | | | || || Sbjct 4999 ATTCTAAGTGATGACGGTGACCTCTTTAACCCAGACCACCAGCATTTACTTGAAGCGGAT 5058 Query 22728 AT-TGCGTTTATGTGGGCGTCATCAGCATTCGAGAAAAAAGGCCGGACGGTTCTTGGTCA 22786 | ||| || | |||||||| || |||||||| ||||| || | |||||||| || Sbjct 5059 CTGTGC-TTCCTCTGGGCGTCGAACGCTTTCGAGAAGAAAGGGCGTTCCGTTCTTGGGCA 5117 Query 22787 ATGCGAAGAAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGAT 22846 |||||||| |||||| || ||||||||||| || || | ||||| ||||| || Sbjct 5118 GGCGGAAGAAGTTGCGATGCGGGCAGGTGGATGGCAGAAAGCGCGCATGGAGCAGCAAAT 5177 Query 22847 GCATGAATGGTTCGGGAGAATCCCAGCA-TTCATTATCACGCTGGCCGCTGACTATTGCG 22905 | | ||||||||||| || | || ||| ||||| ||||||||||| || || || || Sbjct 5178 GTACGAATGGTTCGGCAGGGTGCC-GCAGTTCATCATCACGCTGGCAGCAGATTACTGTT 5236 Query 22906 CGGAGTGCTCCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCC 22965 || | || ||||| |||| |||||||| ||| |||| || |||||||| |||||| ||| Sbjct 5237 CGCAATGTTCCGATCTGGAGTTCTGCGCCCTGTTAGAGCACGAGCTTTATCACATTAGCC 5296 Query 22966 ACGCTACTGATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGA 23025 | || || |||||||| || || ||||| || | | ||| || |||| |||| Sbjct 5297 AGGCGACAGATGAATTTGGCGCGCCGAAGTTCACGCAGGAA---GGCATGCCAAAACTGA 5353 Query 23026 AAATGCGCGGTCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGCAAGCC 23085 | |||| || |||||||| || || || || || || ||||||||||||||||| |||| Sbjct 5354 AGCTGCGTGGCCACGATGTGGAAGAGTTTGTCGGTGTGGTTCGCCGCTACGGTGCGAGCC 5413 Query 23086 GTGACGTGCAGGAAATGGTTGATGCGGCAAACAATAGGCCGGAAGTGGCTCACGTCGATG 23145 |||| |||||||||||| |||||||||| || | |||| || ||||| ||||| Sbjct 5414 GTGAAGTGCAGGAAATGATTGATGCGGCGAATCAGCCAGCGGAGGTTGCTCATCTCGATA 5473 Query 23146 TGGCGAGGGCATGCGGAACGTGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTATGA 23205 | || || || ||||| || ||| | | | |||| ||||| | ||||| || || Sbjct 5474 TTGCCAGAGCTTGCGGGACTTGCATGCTGCGACTGGCTTGAAACTG--GACTGTATAAGA 5531 Query 23206 CGAGTGGTGATTTATGGCGGTACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATT 23265 ||| |||||||||||||| | | ||||| | || || | ||||| ||||||| | Sbjct 5532 CGAATGGTGATTTATGGCTGCATTAAAACCTGATGTGAAAGCCTTCATCGTTCAGTTGCT 5591 Query 23266 AGCCTGCTTTGATACCCCATCTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGC 23325 || |||| ||| || ||||| || |||||||| | ||| | ||||| |||||||| Sbjct 5592 TGCGTGCTATGACACGCCATCGCAAGTGGTCGAGACTGTCCAAAAAGAGTTCGGCATCAA 5651 Query 23326 GATTACTCGGCAGCAGGTTGAATCTCATGACCCGACAAAGGCAAATGGTAGGGGGTTGGC 23385 ||| || |||||||||| ||||| || || ||||| ||||| | |||| | | | || Sbjct 5652 GATCACCCGGCAGCAGGCCGAATCGCACGATCCGACCAAGGCCAGCGGTAAGACGCTCGC 5711 Query 23386 TCAAAAGTGGGTGGATATATTCAACTCTACGCGAGAGCGCTTCCAGAATGAAATCTCCGA 23445 | |||||| | || || ||| || | |||||||| ||||||| || |||| | ||| Sbjct 5712 GAAGAAGTGGATCGAGATGTTCCACGCGACGCGAGAACGCTTCCTGACCGAAACCAGCGA 5771 Query 23446 CATCCCCATAGCCAATAAAGCCTATCGTCTGCGCGTGCTGCAAAGAATGTCTACGTCGGC 23505 ||| || || ||||| ||| ||||||| || |||||||| | | ||| |||| | Sbjct 5772 CATTCCGATCGCCAACAAATCCTATCGCCTCCGCGTGCTTGACCGTATGGCTACCAAAAC 5831 Query 23506 CGAGAATATGAAAAACATGGGGATGACAGCTCAGCTACTGGAGCAGGCTGCTAAAGAGGT 23565 ||| |||| ||| | |||| || ||||| | || ||||| || |||||||| Sbjct 5832 CGAAGGGCTGAAGAACTTCTCCCTGACGGCGCAGCTGATTGAACAGGCCGCGAAAGAGGT 5891 Query 23566 TGGTGATGCGTATTCAAATAAGCAGAGGGTTGAACTAACGGGTAAGGATGGCGGCCC 23622 || || || || | ||||||| || || || || ||||||||||||||||| Sbjct 5892 GGGCGACGCTTACACCAATAAGCTGAAAGTGGAGAGCACCGGTAAGGATGGCGGCCC 5948 >seq4723 Length=43540 Score = 237 bits (262), Expect = 5e-58 Identities = 335/464 (72%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 11980 ATTTTAGATATGTGCTGTGGCAGCCGTATGTTCTGGCGTGACAAACGCGATCCGCGCGCG 12039 ||||||||||||||||| || || ||||||||| ||||| | || ||||||| Sbjct 5313 ATTTTAGATATGTGCTGCGGGTCGCGCATGTTCTGGTTCGACAAGCAGGACGAGCGCGCG 5372 Query 12040 GTGTTTATGGATAACCGCAGCGAACAGCACACACTGTGCGACGGCCGCAGCCTGGTTATC 12099 || || | |||| |||| ||| ||||| ||| |||||||| ||| ||||||||| Sbjct 5373 GTATTCAGTGATATCCGCGCCGAGCAGCATGAACTTTGCGACGGTCGCCAGCTGGTTATC 5432 Query 12100 TCTCCTGACATCATCGCTGACTTTCGCCAGCTCCCTTTTGCTGATGAGTCGTTTCCTGTT 12159 || ||| | || ||||| || || || || ||||| ||| | | |||||||| Sbjct 5433 AGCCCGGACCTTATTGCTGATTTCCGTGCCCTTCCATTTGCCGATCACACATTTCCTGTC 5492 Query 12160 GTCGTATTCGACCCTCCACATCTTGAAAGAGCAGGGCCAGAGGGC-TGGATGCGCAAAAA 12218 ||||||||||| || ||||| || || | | ||| | | || |||||| | ||||| Sbjct 5493 GTCGTATTCGATCCCCCACACCTCGAGCGCG-TCGGCGATAACGCGTGGATGGGTAAAAA 5551 Query 12219 ATACGGCGTGTTGAATCCAAAG--ACATGGCGAGATGATTTGCGTGCTGGATTTGTCGAA 12276 ||||| | | || ||||| |||||||| ||||| | ||||||||||| |||| Sbjct 5552 GTACGGGCGGCTCAA--CAAAGAAACATGGCGCGATGACCTTCGTGCTGGATTCTCCGAA 5609 Query 12277 GCGTTCCGCGTGCTGCGACCTGATGGCGTGTTGATTTTCAAATGGAACGAAACACAGATT 12336 || |||||||||||||| || | ||||| | || ||||||||||||||||| ||||| Sbjct 5610 GCATTCCGCGTGCTGCGGCCACACGGCGTACTCATCTTCAAATGGAACGAAACGCAGATC 5669 Query 12337 CCTGTCAGCCAGGTTTTATCACTGAC--AAGTGAGCGCCCGATTATCACGCAGCGAACAG 12394 || || ||| | |||| | |||| | |||| || ||||| |||||| || | Sbjct 5670 CCGGTAAGCAATATTTTGGCGTTGACCGACGTGA--AACCAGTTATCTGGCAGCGCACCG 5727 Query 12395 GGAAGGGTGACAAAACCCATTGGATTATTTTTGTTAAAGGTGGT 12438 | || ||||||||||| ||| | ||||| || ||||||||| Sbjct 5728 GAAAATCCGACAAAACCCACTGGGTGATTTTCGTCAAAGGTGGT 5771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154819654280768