Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq9686 187 8e-43 seq4723 87.8 5e-13 >seq9686 Length=37809 Score = 187 bits (206), Expect = 8e-43 Identities = 259/356 (73%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 44376 TTTGTCGTTAATCCA-CCGGGCGGCCTTCTTACTT-CACACAGCGCCCCG--ATTACGGA 44431 ||||| |||||| || || || ||||| ||| |||||||| ||||| | |||| Sbjct 3405 TTTGTTGTTAATTCAGCCCGGAGGCCTGACCCCTTACACACAGCACCCCGTAACCCCGGA 3464 Query 44432 GGTGCGGATATGCAACGTATGAACCCAACCGATGGACATAACATGCCGTACTGGTGGTCA 44491 |||| ||| |||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct 3465 GGTGTGGA-ATGCAACGTATGAACCCAACAAATGGACACGATCTGCCGTACTGGTGGTCC 3523 Query 44492 GGGCTGCTT--GGttttttttCTGTTCTGAGTTTGCAAGATTATGTATTTATCCTTGGCG 44549 | |||||| || | || ||| | || || | || ||||| ||||| || | || | Sbjct 3524 G--CTGCTTTAGGGGTGTTCTCTTTGCTTAGCCTACAGGATTACGTATTCATTATCGGTG 3581 Query 44550 CTCTGATCTCGGCCTATTTCACCATTAAGACCTACTACGCGAAGCGGAAAGAAGAACGTG 44609 | ||||| ||||| | |||||| || || ||||||||||| ||||| |||||||| |||| Sbjct 3582 CCCTGATATCGGCGTTTTTCACGATAAAAACCTACTACGCCAAGCGTAAAGAAGAGCGTG 3641 Query 44610 AACGGCTTGATGAAGAGaaaaaaaGAACGCAGTTATTGGCTAAGTACCTTGCTGATGTGG 44669 | || | | || || | |||||| || || | ||||||| ||| | ||||||| | Sbjct 3642 AGCGTATGGCAGAGGAAAGAAAAAGGACCCAACTGCTGGCTAACTACTTGTCTGATGTAG 3701 Query 44670 CCGTTAAACCAGGTCGAGATCGCCCAGCAGCGGCTGAGGTCGTAACAGAGGCAATG 44725 |||||| ||||| || || | || ||||| ||||| ||||| ||| Sbjct 3702 GTAAAAAACCACACTCCGATCGTCCGGCTACCGCCGAGGTGGTAACGGAGGCTATG 3757 >seq4723 Length=43540 Score = 87.8 bits (96), Expect = 5e-13 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39600 CCAGTAATTCCGGATGGCTATGCGCTGGTGCCGATCGTTCCAACCGAGTACATGGTGATT 39659 || || ||||||||||| | | ||||| |||| | | || || || ||||||| || Sbjct 34924 CCGGTGATTCCGGATGGTTGGGTGCTGGCGCCGGTTGAGCCGACAGAAGACATGGTAATC 34865 Query 39660 AACGGCTTCGAGTCTGAGCCAGATCC-ACATTTCAGCGACGAAAAAGTGTGGGCGGAATA 39718 ||| || |||||||| || ||| ||||| |||| | |||| |||| |||||| Sbjct 34864 GCCGGATTTGAGTCTGAACCTGATGAGACATT-CAGCAAACCCGAAGTATGGGAGGAATA 34806 Query 39719 CGAAGCGTTAAGCGGGTGTCGACGGGCTGCGCGACGGGCTGAGTTGTGCTGGGCGGCGAT 39778 | | || | | |||||| | | ||| ||| ||||| ||||||||||| |||| || Sbjct 34805 CCAGGCCATGACCGGGTGCCAGCAGGCGGCGTACCGGGCCAAGTTGTGCTGGTCGGCCAT 34746 Query 39779 GATTAAAGCGGCACCAAAACAGGAG 39803 | | ||| ||||| | |||||| Sbjct 34745 GCTCGCAGCAGCACCGCAGCAGGAG 34721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151305386269066