Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_019545.1
Length=47355
Score E
Sequences producing significant alignments: (Bits) Value
seq9686 187 8e-43
seq4723 87.8 5e-13
>seq9686
Length=37809
Score = 187 bits (206), Expect = 8e-43
Identities = 259/356 (73%), Gaps = 9/356 (3%)
Strand=Plus/Plus
Query 44376 TTTGTCGTTAATCCA-CCGGGCGGCCTTCTTACTT-CACACAGCGCCCCG--ATTACGGA 44431
||||| |||||| || || || ||||| ||| |||||||| ||||| | ||||
Sbjct 3405 TTTGTTGTTAATTCAGCCCGGAGGCCTGACCCCTTACACACAGCACCCCGTAACCCCGGA 3464
Query 44432 GGTGCGGATATGCAACGTATGAACCCAACCGATGGACATAACATGCCGTACTGGTGGTCA 44491
|||| ||| |||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 3465 GGTGTGGA-ATGCAACGTATGAACCCAACAAATGGACACGATCTGCCGTACTGGTGGTCC 3523
Query 44492 GGGCTGCTT--GGttttttttCTGTTCTGAGTTTGCAAGATTATGTATTTATCCTTGGCG 44549
| |||||| || | || ||| | || || | || ||||| ||||| || | || |
Sbjct 3524 G--CTGCTTTAGGGGTGTTCTCTTTGCTTAGCCTACAGGATTACGTATTCATTATCGGTG 3581
Query 44550 CTCTGATCTCGGCCTATTTCACCATTAAGACCTACTACGCGAAGCGGAAAGAAGAACGTG 44609
| ||||| ||||| | |||||| || || ||||||||||| ||||| |||||||| ||||
Sbjct 3582 CCCTGATATCGGCGTTTTTCACGATAAAAACCTACTACGCCAAGCGTAAAGAAGAGCGTG 3641
Query 44610 AACGGCTTGATGAAGAGaaaaaaaGAACGCAGTTATTGGCTAAGTACCTTGCTGATGTGG 44669
| || | | || || | |||||| || || | ||||||| ||| | ||||||| |
Sbjct 3642 AGCGTATGGCAGAGGAAAGAAAAAGGACCCAACTGCTGGCTAACTACTTGTCTGATGTAG 3701
Query 44670 CCGTTAAACCAGGTCGAGATCGCCCAGCAGCGGCTGAGGTCGTAACAGAGGCAATG 44725
|||||| ||||| || || | || ||||| ||||| ||||| |||
Sbjct 3702 GTAAAAAACCACACTCCGATCGTCCGGCTACCGCCGAGGTGGTAACGGAGGCTATG 3757
>seq4723
Length=43540
Score = 87.8 bits (96), Expect = 5e-13
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 39600 CCAGTAATTCCGGATGGCTATGCGCTGGTGCCGATCGTTCCAACCGAGTACATGGTGATT 39659
|| || ||||||||||| | | ||||| |||| | | || || || ||||||| ||
Sbjct 34924 CCGGTGATTCCGGATGGTTGGGTGCTGGCGCCGGTTGAGCCGACAGAAGACATGGTAATC 34865
Query 39660 AACGGCTTCGAGTCTGAGCCAGATCC-ACATTTCAGCGACGAAAAAGTGTGGGCGGAATA 39718
||| || |||||||| || ||| ||||| |||| | |||| |||| ||||||
Sbjct 34864 GCCGGATTTGAGTCTGAACCTGATGAGACATT-CAGCAAACCCGAAGTATGGGAGGAATA 34806
Query 39719 CGAAGCGTTAAGCGGGTGTCGACGGGCTGCGCGACGGGCTGAGTTGTGCTGGGCGGCGAT 39778
| | || | | |||||| | | ||| ||| ||||| ||||||||||| |||| ||
Sbjct 34805 CCAGGCCATGACCGGGTGCCAGCAGGCGGCGTACCGGGCCAAGTTGTGCTGGTCGGCCAT 34746
Query 39779 GATTAAAGCGGCACCAAAACAGGAG 39803
| | ||| ||||| | ||||||
Sbjct 34745 GCTCGCAGCAGCACCGCAGCAGGAG 34721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151305386269066
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |