Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq4723 194 5e-45 >seq4723 Length=43540 Score = 194 bits (214), Expect = 5e-45 Identities = 259/360 (72%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 39411 ATGAACCTTGAAAACACAGTGAAATACCACTTCGCTAAATCCACACTGATTAGCGATTCT 39470 ||||| || ||||||||| |||||| |||||| || || || || |||||||||| ||| Sbjct 34328 ATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTCAACGATGATTAGCGACTCT 34269 Query 39471 CCGCGCGCTACCGCCTCCGATTCACTGACCGGTACCGACATAATGGCTGCCATGGGCATG 39530 |||||||| || || || || || ||||||| || ||||| ||||| || || |||||| Sbjct 34268 CCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGATTGGCATG 34209 Query 39531 ACGCAGGAACGCGCCGCAATGGGTTACAGCGCCTTCCTCGGCAAGATGGGCATAAGCAAT 39590 || || ||||||||| | || | || || |||||||||||||||| || ||| | Sbjct 34208 ACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATATCAGCGAC 34149 Query 39591 AACGACCGGGATCGGGCTATCGGACTGCTGGCTGAGTACGCGATGACCAAATGTGACAAG 39650 | ||||| || ||||| |||||||| | || | | || ||| | || |||||| Sbjct 34148 TATGACCGTGACCGGGCGATCGGACTTTTAACTCAACATGCAATGGAGCAGTGCGACAAG 34089 Query 39651 GTTGCCGCGCTGCGTAAGTTGGATTTCGGGGTTAAGCCTCAGGTGATGTACCAGTTGGCC 39710 ||||| || | || ||| | || | |||||| | | |||||| | | | || Sbjct 34088 GTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGATGCAAGTGCTCGCA 34029 Query 39711 ACCTTCGCATTTGAGGATTATTCCCGCAGCGCAGCCAGTGTAAAACGGTGCGATTGCTGC 39770 || |||||||||| || || | |||||||| ||||| | | |||||| |||||| Sbjct 34028 ACGTTCGCATTTGCTGACTACGCACGCAGCGCCGCCAGCACCAGAATGTGCGACTGCTGC 33969 Score = 152 bits (168), Expect = 1e-32 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 29608 CCGTTCAGATAAACTTCAACCAGCAAATCCTTGGTGTAAGTCATTTCTACGCCGCGATGC 29667 ||||||||||| || || |||| | || |||||||| || || | |||||| ||| Sbjct 304 CCGTTCAGATACACCTCGACCAAAAGCTCTTTGGTGTAGGTGCGCTCAAAGCCGCGGTGC 245 Query 29668 AGATACAAACGTCCGCGAGCGTTAGCTGATGCCGTCCAGGTTGAGTCTTTGTGTTTGACG 29727 || |||| ||| ||||||| ||||||||||||||||||||| | ||| | ||| |||| Sbjct 244 AGGTACAGACGACCGCGAGTGTTAGCTGATGCCGTCCAGGTGGTGTCGTGGTGCTTGATA 185 Query 29728 AGCATCCCCGGCTGAACTGCGCCGCGGTTTACTGTCTGTGTACCGTAGTGCTGATGAACC 29787 ||||| || ||||||| ||| ||||| |||||| || || ||||| || ||||||||| Sbjct 184 AGCATTCCGGGCTGAATAGCGGCGCGGCATACTGTTTGGGTGCCGTAATGTTGATGAACC 125 Query 29788 AT 29789 || Sbjct 124 AT 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141776251897026