Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq4723 123 7e-24 >seq4723 Length=43540 Score = 123 bits (136), Expect = 7e-24 Identities = 201/283 (71%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 26216 GCAATATGGAGCAATCCCATATAGCTGATATCAAGGCAAACCATGCCGTCGCGAGGAACC 26275 || ||||| | || ||||| ||||| || || ||||| | |||| | || || ||| Sbjct 983 GCGATATGCATCAGGCCCATGTAGCTAATGTCGAGGCAGATGCTGCCTTTACGTGGCACC 924 Query 26276 AGATAAGCCAGTTTGCTAGCCGGGTTTAAGGTGATACCGATCGCCGCAACATTGATGATG 26335 |||||||| || || || ||||| | | || ||||| |||||||| |||||||| Sbjct 923 AGATAAGCAAGCTTCTGCGCTGGGTTGAGCGAAATGCCGATAGCCGCAACGTTGATGATC 864 Query 26336 GCGTTCTGTGCGCTGGT-TGGATTTGCCAGTGCTGTTTTAGCCAGGTAATCGTTTTTCTG 26394 |||||||| | ||| | ||| | || | ||| ||| || ||||| ||||| | || Sbjct 863 GCGTTCTGCGTACTGCTCTGGTTCTGGAA-TGCAACTTTGGCGAGGTAGTCGTTGCTTTG 805 Query 26395 GAAATACTGAATTGCAAACTGGCTTTCCTTAGCCCATGTCACCGTCTGTTCAGTCAATG- 26453 || |||| || || |||||||||||||| ||||| |||| || ||||| ||| || Sbjct 804 AAATAACTGGATGGCGAACTGGCTTTCCTTCGCCCA---CACCATCCGTTCA-TCAGTGG 749 Query 26454 -CTCCGCA--GAATAACTGCTCTTGCTGTTTAACGAATTCAAC 26493 | || | ||| | | |||| || ||||| | ||| ||||| Sbjct 748 CCGCCTTAATGAAAAGCGGCTCCTGTTGTTTGATGAAATCAAC 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132797121253842