Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq4723 154 4e-33 >seq4723 Length=43540 Score = 154 bits (170), Expect = 4e-33 Identities = 115/135 (85%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 24099 TTCAAATCCAGCCTGATTATCCGTTTGACCAAAACTGAAGCCATGCTGAAGACCATGACG 24158 ||| ||||| | ||| | || || ||||||| |||||||||||||||||||||||||| Sbjct 35467 TTCGAATCCTGACTGGTCGTCGGTCTGACCAAGGCTGAAGCCATGCTGAAGACCATGACG 35526 Query 24159 AAATGCGCTATCTTGCAATTTATCTGCGCTATCGAGCTTCGCTTCCAGTTCAGCGATTCG 24218 |||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| || Sbjct 35527 AAATGCGCTATCTTGCAATTTATCTGCGGTTTCGAGCTTCGCCTCCAGCTCAGCAGACCG 35586 Query 24219 CTTCTCTGCGGCTTC 24233 | |||||||||| || Sbjct 35587 CCTCTCTGCGGCCTC 35601 Score = 131 bits (144), Expect = 4e-26 Identities = 205/284 (72%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 27448 GCAATATGGAGCAATCCCATATAGCTGATATCAAGGCAAACCATGCCGTCGCGAGGAACC 27507 || ||||| | || ||||| ||||| || || ||||| | |||| | || || ||| Sbjct 983 GCGATATGCATCAGGCCCATGTAGCTAATGTCGAGGCAGATGCTGCCTTTACGTGGCACC 924 Query 27508 AGATAAGCCAGTTTGCTG-GCAGGGTTTAAGGTGATGCCGATCGCAGCAACATTGATGAT 27566 |||||||| || || ||| || ||||| | | |||||||| || ||||| |||||||| Sbjct 923 AGATAAGCAAGCTT-CTGCGCTGGGTTGAGCGAAATGCCGATAGCCGCAACGTTGATGAT 865 Query 27567 AGCGTTCTGTGCGCTGGT-TGGATTTGCCAGTGCCGTTTTAGCCAGGTAATCGTTTTTCT 27625 |||||||| | ||| | ||| | || | ||| ||| || ||||| ||||| | | Sbjct 864 CGCGTTCTGCGTACTGCTCTGGTTCTGGAA-TGCAACTTTGGCGAGGTAGTCGTTGCTTT 806 Query 27626 GGAAATACTGAATTGCAAACTGGCTTTCCTTAGCCCATGTCACCGTCTGTTCAGTCAATG 27685 | || |||| || || |||||||||||||| ||||| |||| || ||||| ||| || Sbjct 805 GAAATAACTGGATGGCGAACTGGCTTTCCTTCGCCCA---CACCATCCGTTCA-TCAGTG 750 Query 27686 --CTCC--ACAGAATAACTGCTCCTGCTGTTTAACGAATTCAAC 27725 | || | ||| | | ||||||| ||||| | ||| ||||| Sbjct 749 GCCGCCTTAATGAAAAGCGGCTCCTGTTGTTTGATGAAATCAAC 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130056695697856