Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq4723 87.8 5e-13 >seq4723 Length=43540 Score = 87.8 bits (96), Expect = 5e-13 Identities = 79/98 (81%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 36516 CTCACCAATAAAAAACGCCCGGAGGCAACCGAGCGTTCTGAACAAATCCAGATGGAATTC 36575 ||||| || ||||| ||||||| |||||||||||| || || |||||| || |||| Sbjct 39171 CTCACAAAGAAAAATCGCCCGGCGGCAACCGAGCGATCAGATCAAATCACCATAACATTC 39112 Query 36576 TGAG-GTCATTACTGGATCAATCCACAGGAGTAATTAT 36612 |||| || ||||||||||| ||||||||||||||| Sbjct 39111 TGAGACGAATAACTGGATCAATTCACAGGAGTAATTAT 39074 Score = 80.6 bits (88), Expect = 8e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 29703 CAGTTCTGCTATGCGCTTTTTTGCTGTTTCCAGCTCGCCCAGCAGCGCCAAGACGGTAGC 29762 ||| |||||||||||||| | ||| | ||||| ||| |||||||||||| ||||| || Sbjct 35677 CAGCTCTGCTATGCGCTTCTCTGCGGCTTCCATCTCATCCAGCAGCGCCAGCACGGTGGC 35736 Query 29763 CGGATTGGCTGCAGCGATGAATTCAGCAT 29791 || || || || |||||||| | ||||| Sbjct 35737 GGGGTTAGCCGCGGCGATGAAATTAGCAT 35765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151091140630500