Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq4723 731 0.0 >seq4723 Length=43540 Score = 731 bits (810), Expect = 0.0 Identities = 817/1085 (75%), Gaps = 20/1085 (2%) Strand=Plus/Minus Query 33259 CCAAACGTCTCTTCAGGCCACCGCTACAGCAATACCGAGTACCAGAAGAGGCGGCCGATT 33318 ||||||||||| ||||||||| ||||||| ||||||||||| || | |||||| || Sbjct 40562 CCAAACGTCTCGTCAGGCCAC---TACAGCAGGACCGAGTACCAAAAAACGCGGCCAATA 40506 Query 33319 ATCTCAACATCATCAATGTCAGCTTCTTCATCAGGGTAGGCCTCATTGTTGTAGCTGCGG 33378 | ||| ||||| | || ||| ||||| ||| ||| ||||||| Sbjct 40505 ACCTCGACATCCGCCTCGTTGGCTGTCTCATCTT-------CTCG--GTTAAAGCTGCGT 40455 Query 33379 ATAATTAGCTTTCCGCCTGGCTTACGATACAGCTGTTTAATGCGCTTGAGTTGACCATTC 33438 ||| | ||| |||| || || |||||||| ||||| || |||||||| || | | | | Sbjct 40454 ATAGTCAGCATTCCTCCGGGATTACGATATAGCTGCTTTATGCGCTTAAGCTTATCGTCA 40395 Query 33439 CCGCCATCTGTCTGACCAATGGCATACAGTTTCCCATCAACTATGCGTTTGTTGTTCGTA 33498 ||||| | | || | || ||||| || |||||||||||||| |||||||| ||||| Sbjct 40394 CCGCCGCCCGGTTGGGCGATCGCATAAAGCTTCCCATCAACTATTCGTTTGTTATTCGTG 40335 Query 33499 TCGACGGCTACAGTCGTACCATCCGGTATCACAGGTTCCATGCTGTCGCCAGTAGCAGGG 33558 || || || || || || || || |||||||| ||||||||||| || || ||||| ||| Sbjct 40334 TCTACCGCAACGGTGGTTCCGTCAGGTATCACCGGTTCCATGCTATCACCGGTAGCGGGG 40275 Query 33559 AAACACAGGATGCCAGACCCATCTGTGTTAGCTCCAACGCGGCGGAGGGTTGCCTTTGAG 33618 ||||| |||| ||||| ||||| | || || || ||||| || ||||| ||||||||| Sbjct 40274 AAACAGAGGACTCCAGAACCATCACTATTTGCACCGACGCGTCGCAGGGTAGCCTTTGAG 40215 Query 33619 AACCTGAGCTTAAAACCATTGTGATCTTCGCTGTGTACGCGTCCATCGCCACACGCAAAT 33678 ||||| | ||||| || |||||||||||||| || || || ||||| || |||||||| Sbjct 40214 AACCTCAATTTAAATCCGTTGTGATCTTCGCTATGGACACGGCCATCCCCGCACGCAAAC 40155 Query 33679 TCAATATCCTTAAGAAATGGCACTTCAACCTCATCAACAGGAAGCGGGGTGTCTTTATCC 33738 || ||||||||||| || |||||||| ||||||||| | || || || |||| |||||| Sbjct 40154 TCGATATCCTTAAGGAACGGCACTTCGACCTCATCATCTGGTAGGGGCGTGTTCTTATCC 40095 Query 33739 CATGCATCAACAACTCCCCACTCAGACTCTGGCGGGATGTTGCTCTCCAGATCCTTCTTT 33798 ||||| |||||| ||||| || || ||||| || ||| | || || | | || || Sbjct 40094 CATGCGTCAACAGTCCCCCATTCTGATTCTGGAGGAATGCTACTATCGAAACCCGGTTTA 40035 Query 33799 GGAGAACCCTCTCCATTTAATAAGCAGTCAAGAGAATAACCGAATTTTTCAGATATTTGT 33858 || |||| ||||||||| | || ||||||||||| ||| | ||||| |||||||| Sbjct 40034 GGGTCTCCCTTTCCATTTAAAAGCCAATCAAGAGAATACCCGTACTTTTCTGATATTTGC 39975 Query 33859 TGCGCCGCCTCACGACTTAACGCGTCTCTTTTTATCCAGTTGTTGACGGTCTGTGGGCTA 33918 || || ||||| || |||| | ||| | ||| |||||||| ||||||||||| | || Sbjct 39974 TGAGCAGCCTCGCGGCTTATTGAGTCGCGTTTAATCCAGTTATTGACGGTCTGCGCACTC 39915 Query 33919 GTCGACAAAGCCTCAGCCAAATCCCGCTGCTTCAAGCCTTCCCTTGCCAGTAAAAATTTA 33978 || || | ||||| |||||| ||| |||| | ||| || || ||||| | | Sbjct 39914 GTAGAAAGTTGTTCAGCTAAATCCTTCTGTTTCATTCTTTCTCTGGCAAGTAACAGCCTG 39855 Query 33979 ATTCTTTCAGAAATGCTACTCATAAAACCCTCCGCT--CCATGCATGGTAAACAACATGT 34036 |||||||| | ||| | |||||| ||| |||||||| || ||||||||||| |||| Sbjct 39854 ATTCTTTCCGCAATTCCACTCAT-AAATCCTCCGCTTACCCCCCATGGTAAACATGATGT 39796 Query 34037 GGATTTTTTCCATCACCATAATGTTGATTTAATCCACATCATGAATTAACATGGTGTTGA 34096 | ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 39795 GTATTTTTTCCATCATCATGATGTTGATTTAATCCACGCCATGAATTAACATGGTGTTGA 39736 Query 34097 TTACACATGAGC-GGAGCAAAACATGATCAACAAAGAATCCAACGCAAGCACCCCGCTTG 34155 ||| || | ||| |||| || |||||||||||| || | || || || || |||| Sbjct 39735 TTA-ACGTTAGCTGGAGTAAGACATGATCAACA---AACCGAAGGCCGCTACTCCTCTTG 39680 Query 34156 AGAAAGCCATTAATGCAGTGGGCGGCTCTCAAAAGGTGCTTGCTGAAAAGGTCGGCGTAA 34215 | | || || ||||| || || |||||||| ||| | || || || ||||||||||| | Sbjct 39679 ACATGGCTATCAATGCTGTTGGTGGCTCTCAGAAGATTCTCGCCGAGAAGGTCGGCGTTA 39620 Query 34216 CTCCACAGGCCATCAATATGCTTAAAAAGCGAGGTGGCAGCCTTCCAGTAACAAAAATGC 34275 | || || |||||||| ||||||||||||||||| || ||||| || || || ||||||| Sbjct 39619 CACCTCAAGCCATCAACATGCTTAAAAAGCGAGGCGGAAGCCTCCCGGTTACCAAAATGC 39560 Query 34276 GTAAGTACGAAGAAGTGACGGGGCTTCCTCGCGAAGTTCTATATCCAGGTATCTTTGCCG 34335 ||||| ||||||| || || || | ||||| || || ||||| || ||| | | Sbjct 39559 TGAAGTATGAAGAAGCAACCGGTCTGTCAAAAGAAGTGCTGTACCCAGGCATTTTTACTG 39500 Query 34336 CCTAA 34340 ||||| Sbjct 39499 CCTAA 39495 Score = 367 bits (406), Expect = 4e-97 Identities = 272/312 (87%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 31271 TGTGATTCAGCCCAGCCCACTCAACTTCGAATGGACTGGAATAAATCTGTTTGCGCTTCG 31330 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 42516 TGTGATTCAGCCCAGCCCACTCAACTTCGAATGGGCTGGAATAAATCTGTTTGCGCTTCG 42457 Query 31331 CACCTCTCATCCTGCCAGTGTTGCCCGTTCTCACGCCGTTATCGCTCTCGCGCGGGGATA 31390 |||||||||||| ||||||||||||||||| |||||| | ||||||||| || |||| || Sbjct 42456 CACCTCTCATCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTA 42397 Query 31391 -CTCTCTCACCGACCGGATCGCACCCGGTGATACAGCACGTTTTCGTGTAGGGGTCTTAA 31449 | ||||||| |||||||||| | |||||||| | | ||| | || ||||||| || Sbjct 42396 GCCTTCTCACCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAA 42337 Query 31450 CAGG-TCATTGA-CGCTGT---AAATCTGCATGTTGTT-AAAAAGCAGGCGACTTACTGT 31503 |||| | | || ||||| | | ||||||||||| ||||||||||||||||||||| Sbjct 42336 CAGGATTACCGAGTGCTGTTCCGACTTTGCATGTTGTTAAAAAAGCAGGCGACTTACTGT 42277 Query 31504 CCGCCGCTGGCTAACTTCGCTCAGCTGTCGATGTTTCGTTTCGATGGGATAATTAAACAT 31563 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 42276 CCGCCGCTGGCTAACTTCGCTCAGCTGTCGATGTTTCGTTTCGATGGATTGATTAAACAT 42217 Query 31564 CATGTGGATTTA 31575 |||||||||||| Sbjct 42216 CATGTGGATTTA 42205 Score = 183 bits (202), Expect = 9e-42 Identities = 244/339 (72%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 42031 ATGAACCTCGAAAACACCGTGAAATATCACTTCGCCAAGTCGACGCTTATTAGCGACTCT 42090 ||||| ||||||||||| |||||| ||||| || ||||| ||| | |||||||||||| Sbjct 34328 ATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTCAACGATGATTAGCGACTCT 34269 Query 42091 CCGCGCGCCACTGGTTCAGATTCGCTGACCGGGACGGATGTCATGGCGGCCATGGGCATG 42150 ||||||||||| | ||||| || ||||||| || || |||||||||| || |||||| Sbjct 34268 CCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGATTGGCATG 34209 Query 42151 ACCCAGGAACGTGCCGCCATGGGATACAGTGCCTTCCTCGGCAAGATGGGCATCAGTTAC 42210 || || ||| ||||| | || | ||||| |||||||||||||||| ||||| || Sbjct 34208 ACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATATCAGCGAC 34149 Query 42211 AACGATCGGGAGAGGGCGATTGAGTTGCTGTCTGAGTACGCGTTAACCAAATGCGATAAG 42270 | || || || ||||||| | | | || | | || | | ||||| ||| Sbjct 34148 TATGACCGTGACCGGGCGATCGGACTTTTAACTCAACATGCAATGGAGCAGTGCGACAAG 34089 Query 42271 GTTGCCGCGCTGCGTAAGTTGGATTCCGGGGTTAAGCCTAAGGTGATGCACCAGTTGGCC 42330 ||||| || | || ||| | || | | |||||| ||| |||||||| | | || Sbjct 34088 GTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGATGCAAGTGCTCGCA 34029 Query 42331 ACCTTCGCTTTTGAAGATTACTCCCGCAGCGCTGCGAGC 42369 || ||||| |||| || ||| | |||||||| || ||| Sbjct 34028 ACGTTCGCATTTGCTGACTACGCACGCAGCGCCGCCAGC 33990 Score = 143 bits (158), Expect = 8e-30 Identities = 153/196 (78%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 39788 CAAGCAACGTTTGATAAAACACTATCAACGAGCCATAATAAATCTGCCAGCGGCCTGAAC 39847 |||||||| |||||||| ||||| |||||||||| | |||| | | ||||| Sbjct 34708 CAAGCAACATTTGATAATCAGATATCAGTGAGCCATAATCATGTCACCAGAG-CTTGAAC 34650 Query 39848 AACCCTGGCAGACTTCTGCGCATTTAAGGGGACTTAAATGCG--ACCACAATCTGAACTC 39905 ||| |||| ||||||||||| | | |||||| | ||||| | ||||| | || Sbjct 34649 AACTCTGGT-GACTTCTGCGC-TAAACGGGGACGTTTATGCGCAAACACAAAGAGTACCG 34592 Query 39906 CTC-ACCTTGTCACAGATGCAGAAATGCACCTGCGATTTTCTGCATTCTGCGGCTTCCGT 39964 | | |||| |||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 34591 CACCACCTCATCACAGATGCAGAAATGCACCTGCGATTATCTGCATTCTGCGGTTTCCGT 34532 Query 39965 TAAGGAGGCCGTATGA 39980 ||||||||||| |||| Sbjct 34531 TAAGGAGGCCGCATGA 34516 Score = 136 bits (150), Expect = 1e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 29948 GTTAATGGCTGAGGCCATTCCCCAGACCGTTCAGATAAACTTCAACCAGCAAATCCCTGG 30007 |||| || | ||||| | || | ||||||||||| || || |||| | || ||| Sbjct 330 GTTAGTGCTTCAGGCCGTCGCCGCGCCCGTTCAGATACACCTCGACCAAAAGCTCTTTGG 271 Query 30008 TGTAAGTCATCTCAACGCCGCGATGCAGATACAAACGACCACGAGCATTAGCTGATGCCG 30067 |||| || ||||| |||||| ||||| |||| |||||| |||| ||||||||||||| Sbjct 270 TGTAGGTGCGCTCAAAGCCGCGGTGCAGGTACAGACGACCGCGAGTGTTAGCTGATGCCG 211 Query 30068 TCCAGGTTGAATCCTTGTGTTTGACGAGCATCCCCGGCTGAACTGCGCCGCGGTTTACTG 30127 ||||||| | || | ||| |||| ||||| || ||||||| ||| ||||| ||||| Sbjct 210 TCCAGGTGGTGTCGTGGTGCTTGATAAGCATTCCGGGCTGAATAGCGGCGCGGCATACTG 151 Query 30128 TCTGTGTACCGTAGTGCTGGTTTACCAT 30155 | || || ||||| || || | ||||| Sbjct 150 TTTGGGTGCCGTAATGTTGATGAACCAT 123 Score = 116 bits (128), Expect = 1e-21 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 37693 GTGATGCTGCATTTATCGCCGCAGCCAACCCCGCCACCGTACTGGCGCTGTTGGATGAGC 37752 || ||||| || |||||||| || |||||||||||||| ||||||||| |||||||| Sbjct 35768 GTCATGCTAATTTCATCGCCGCGGCTAACCCCGCCACCGTGCTGGCGCTGCTGGATGAGA 35709 Query 37753 TGGAAGCCGCAGAGAAGCGCATAGCAGAACTG 37784 |||||||||||||||||||||||||||| ||| Sbjct 35708 TGGAAGCCGCAGAGAAGCGCATAGCAGAGCTG 35677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144945168730144