Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_019717.1
Length=45366
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 731 0.0
>seq4723
Length=43540
Score = 731 bits (810), Expect = 0.0
Identities = 817/1085 (75%), Gaps = 20/1085 (2%)
Strand=Plus/Minus
Query 33259 CCAAACGTCTCTTCAGGCCACCGCTACAGCAATACCGAGTACCAGAAGAGGCGGCCGATT 33318
||||||||||| ||||||||| ||||||| ||||||||||| || | |||||| ||
Sbjct 40562 CCAAACGTCTCGTCAGGCCAC---TACAGCAGGACCGAGTACCAAAAAACGCGGCCAATA 40506
Query 33319 ATCTCAACATCATCAATGTCAGCTTCTTCATCAGGGTAGGCCTCATTGTTGTAGCTGCGG 33378
| ||| ||||| | || ||| ||||| ||| ||| |||||||
Sbjct 40505 ACCTCGACATCCGCCTCGTTGGCTGTCTCATCTT-------CTCG--GTTAAAGCTGCGT 40455
Query 33379 ATAATTAGCTTTCCGCCTGGCTTACGATACAGCTGTTTAATGCGCTTGAGTTGACCATTC 33438
||| | ||| |||| || || |||||||| ||||| || |||||||| || | | | |
Sbjct 40454 ATAGTCAGCATTCCTCCGGGATTACGATATAGCTGCTTTATGCGCTTAAGCTTATCGTCA 40395
Query 33439 CCGCCATCTGTCTGACCAATGGCATACAGTTTCCCATCAACTATGCGTTTGTTGTTCGTA 33498
||||| | | || | || ||||| || |||||||||||||| |||||||| |||||
Sbjct 40394 CCGCCGCCCGGTTGGGCGATCGCATAAAGCTTCCCATCAACTATTCGTTTGTTATTCGTG 40335
Query 33499 TCGACGGCTACAGTCGTACCATCCGGTATCACAGGTTCCATGCTGTCGCCAGTAGCAGGG 33558
|| || || || || || || || |||||||| ||||||||||| || || ||||| |||
Sbjct 40334 TCTACCGCAACGGTGGTTCCGTCAGGTATCACCGGTTCCATGCTATCACCGGTAGCGGGG 40275
Query 33559 AAACACAGGATGCCAGACCCATCTGTGTTAGCTCCAACGCGGCGGAGGGTTGCCTTTGAG 33618
||||| |||| ||||| ||||| | || || || ||||| || ||||| |||||||||
Sbjct 40274 AAACAGAGGACTCCAGAACCATCACTATTTGCACCGACGCGTCGCAGGGTAGCCTTTGAG 40215
Query 33619 AACCTGAGCTTAAAACCATTGTGATCTTCGCTGTGTACGCGTCCATCGCCACACGCAAAT 33678
||||| | ||||| || |||||||||||||| || || || ||||| || ||||||||
Sbjct 40214 AACCTCAATTTAAATCCGTTGTGATCTTCGCTATGGACACGGCCATCCCCGCACGCAAAC 40155
Query 33679 TCAATATCCTTAAGAAATGGCACTTCAACCTCATCAACAGGAAGCGGGGTGTCTTTATCC 33738
|| ||||||||||| || |||||||| ||||||||| | || || || |||| ||||||
Sbjct 40154 TCGATATCCTTAAGGAACGGCACTTCGACCTCATCATCTGGTAGGGGCGTGTTCTTATCC 40095
Query 33739 CATGCATCAACAACTCCCCACTCAGACTCTGGCGGGATGTTGCTCTCCAGATCCTTCTTT 33798
||||| |||||| ||||| || || ||||| || ||| | || || | | || ||
Sbjct 40094 CATGCGTCAACAGTCCCCCATTCTGATTCTGGAGGAATGCTACTATCGAAACCCGGTTTA 40035
Query 33799 GGAGAACCCTCTCCATTTAATAAGCAGTCAAGAGAATAACCGAATTTTTCAGATATTTGT 33858
|| |||| ||||||||| | || ||||||||||| ||| | ||||| ||||||||
Sbjct 40034 GGGTCTCCCTTTCCATTTAAAAGCCAATCAAGAGAATACCCGTACTTTTCTGATATTTGC 39975
Query 33859 TGCGCCGCCTCACGACTTAACGCGTCTCTTTTTATCCAGTTGTTGACGGTCTGTGGGCTA 33918
|| || ||||| || |||| | ||| | ||| |||||||| ||||||||||| | ||
Sbjct 39974 TGAGCAGCCTCGCGGCTTATTGAGTCGCGTTTAATCCAGTTATTGACGGTCTGCGCACTC 39915
Query 33919 GTCGACAAAGCCTCAGCCAAATCCCGCTGCTTCAAGCCTTCCCTTGCCAGTAAAAATTTA 33978
|| || | ||||| |||||| ||| |||| | ||| || || ||||| | |
Sbjct 39914 GTAGAAAGTTGTTCAGCTAAATCCTTCTGTTTCATTCTTTCTCTGGCAAGTAACAGCCTG 39855
Query 33979 ATTCTTTCAGAAATGCTACTCATAAAACCCTCCGCT--CCATGCATGGTAAACAACATGT 34036
|||||||| | ||| | |||||| ||| |||||||| || ||||||||||| ||||
Sbjct 39854 ATTCTTTCCGCAATTCCACTCAT-AAATCCTCCGCTTACCCCCCATGGTAAACATGATGT 39796
Query 34037 GGATTTTTTCCATCACCATAATGTTGATTTAATCCACATCATGAATTAACATGGTGTTGA 34096
| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 39795 GTATTTTTTCCATCATCATGATGTTGATTTAATCCACGCCATGAATTAACATGGTGTTGA 39736
Query 34097 TTACACATGAGC-GGAGCAAAACATGATCAACAAAGAATCCAACGCAAGCACCCCGCTTG 34155
||| || | ||| |||| || |||||||||||| || | || || || || ||||
Sbjct 39735 TTA-ACGTTAGCTGGAGTAAGACATGATCAACA---AACCGAAGGCCGCTACTCCTCTTG 39680
Query 34156 AGAAAGCCATTAATGCAGTGGGCGGCTCTCAAAAGGTGCTTGCTGAAAAGGTCGGCGTAA 34215
| | || || ||||| || || |||||||| ||| | || || || ||||||||||| |
Sbjct 39679 ACATGGCTATCAATGCTGTTGGTGGCTCTCAGAAGATTCTCGCCGAGAAGGTCGGCGTTA 39620
Query 34216 CTCCACAGGCCATCAATATGCTTAAAAAGCGAGGTGGCAGCCTTCCAGTAACAAAAATGC 34275
| || || |||||||| ||||||||||||||||| || ||||| || || || |||||||
Sbjct 39619 CACCTCAAGCCATCAACATGCTTAAAAAGCGAGGCGGAAGCCTCCCGGTTACCAAAATGC 39560
Query 34276 GTAAGTACGAAGAAGTGACGGGGCTTCCTCGCGAAGTTCTATATCCAGGTATCTTTGCCG 34335
||||| ||||||| || || || | ||||| || || ||||| || ||| | |
Sbjct 39559 TGAAGTATGAAGAAGCAACCGGTCTGTCAAAAGAAGTGCTGTACCCAGGCATTTTTACTG 39500
Query 34336 CCTAA 34340
|||||
Sbjct 39499 CCTAA 39495
Score = 367 bits (406), Expect = 4e-97
Identities = 272/312 (87%), Gaps = 7/312 (2%)
Strand=Plus/Minus
Query 31271 TGTGATTCAGCCCAGCCCACTCAACTTCGAATGGACTGGAATAAATCTGTTTGCGCTTCG 31330
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 42516 TGTGATTCAGCCCAGCCCACTCAACTTCGAATGGGCTGGAATAAATCTGTTTGCGCTTCG 42457
Query 31331 CACCTCTCATCCTGCCAGTGTTGCCCGTTCTCACGCCGTTATCGCTCTCGCGCGGGGATA 31390
|||||||||||| ||||||||||||||||| |||||| | ||||||||| || |||| ||
Sbjct 42456 CACCTCTCATCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTA 42397
Query 31391 -CTCTCTCACCGACCGGATCGCACCCGGTGATACAGCACGTTTTCGTGTAGGGGTCTTAA 31449
| ||||||| |||||||||| | |||||||| | | ||| | || ||||||| ||
Sbjct 42396 GCCTTCTCACCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAA 42337
Query 31450 CAGG-TCATTGA-CGCTGT---AAATCTGCATGTTGTT-AAAAAGCAGGCGACTTACTGT 31503
|||| | | || ||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 42336 CAGGATTACCGAGTGCTGTTCCGACTTTGCATGTTGTTAAAAAAGCAGGCGACTTACTGT 42277
Query 31504 CCGCCGCTGGCTAACTTCGCTCAGCTGTCGATGTTTCGTTTCGATGGGATAATTAAACAT 31563
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 42276 CCGCCGCTGGCTAACTTCGCTCAGCTGTCGATGTTTCGTTTCGATGGATTGATTAAACAT 42217
Query 31564 CATGTGGATTTA 31575
||||||||||||
Sbjct 42216 CATGTGGATTTA 42205
Score = 183 bits (202), Expect = 9e-42
Identities = 244/339 (72%), Gaps = 0/339 (0%)
Strand=Plus/Minus
Query 42031 ATGAACCTCGAAAACACCGTGAAATATCACTTCGCCAAGTCGACGCTTATTAGCGACTCT 42090
||||| ||||||||||| |||||| ||||| || ||||| ||| | ||||||||||||
Sbjct 34328 ATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTCAACGATGATTAGCGACTCT 34269
Query 42091 CCGCGCGCCACTGGTTCAGATTCGCTGACCGGGACGGATGTCATGGCGGCCATGGGCATG 42150
||||||||||| | ||||| || ||||||| || || |||||||||| || ||||||
Sbjct 34268 CCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGATTGGCATG 34209
Query 42151 ACCCAGGAACGTGCCGCCATGGGATACAGTGCCTTCCTCGGCAAGATGGGCATCAGTTAC 42210
|| || ||| ||||| | || | ||||| |||||||||||||||| ||||| ||
Sbjct 34208 ACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATATCAGCGAC 34149
Query 42211 AACGATCGGGAGAGGGCGATTGAGTTGCTGTCTGAGTACGCGTTAACCAAATGCGATAAG 42270
| || || || ||||||| | | | || | | || | | ||||| |||
Sbjct 34148 TATGACCGTGACCGGGCGATCGGACTTTTAACTCAACATGCAATGGAGCAGTGCGACAAG 34089
Query 42271 GTTGCCGCGCTGCGTAAGTTGGATTCCGGGGTTAAGCCTAAGGTGATGCACCAGTTGGCC 42330
||||| || | || ||| | || | | |||||| ||| |||||||| | | ||
Sbjct 34088 GTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGATGCAAGTGCTCGCA 34029
Query 42331 ACCTTCGCTTTTGAAGATTACTCCCGCAGCGCTGCGAGC 42369
|| ||||| |||| || ||| | |||||||| || |||
Sbjct 34028 ACGTTCGCATTTGCTGACTACGCACGCAGCGCCGCCAGC 33990
Score = 143 bits (158), Expect = 8e-30
Identities = 153/196 (78%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 39788 CAAGCAACGTTTGATAAAACACTATCAACGAGCCATAATAAATCTGCCAGCGGCCTGAAC 39847
|||||||| |||||||| ||||| |||||||||| | |||| | | |||||
Sbjct 34708 CAAGCAACATTTGATAATCAGATATCAGTGAGCCATAATCATGTCACCAGAG-CTTGAAC 34650
Query 39848 AACCCTGGCAGACTTCTGCGCATTTAAGGGGACTTAAATGCG--ACCACAATCTGAACTC 39905
||| |||| ||||||||||| | | |||||| | ||||| | ||||| | ||
Sbjct 34649 AACTCTGGT-GACTTCTGCGC-TAAACGGGGACGTTTATGCGCAAACACAAAGAGTACCG 34592
Query 39906 CTC-ACCTTGTCACAGATGCAGAAATGCACCTGCGATTTTCTGCATTCTGCGGCTTCCGT 39964
| | |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 34591 CACCACCTCATCACAGATGCAGAAATGCACCTGCGATTATCTGCATTCTGCGGTTTCCGT 34532
Query 39965 TAAGGAGGCCGTATGA 39980
||||||||||| ||||
Sbjct 34531 TAAGGAGGCCGCATGA 34516
Score = 136 bits (150), Expect = 1e-27
Identities = 155/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 29948 GTTAATGGCTGAGGCCATTCCCCAGACCGTTCAGATAAACTTCAACCAGCAAATCCCTGG 30007
|||| || | ||||| | || | ||||||||||| || || |||| | || |||
Sbjct 330 GTTAGTGCTTCAGGCCGTCGCCGCGCCCGTTCAGATACACCTCGACCAAAAGCTCTTTGG 271
Query 30008 TGTAAGTCATCTCAACGCCGCGATGCAGATACAAACGACCACGAGCATTAGCTGATGCCG 30067
|||| || ||||| |||||| ||||| |||| |||||| |||| |||||||||||||
Sbjct 270 TGTAGGTGCGCTCAAAGCCGCGGTGCAGGTACAGACGACCGCGAGTGTTAGCTGATGCCG 211
Query 30068 TCCAGGTTGAATCCTTGTGTTTGACGAGCATCCCCGGCTGAACTGCGCCGCGGTTTACTG 30127
||||||| | || | ||| |||| ||||| || ||||||| ||| ||||| |||||
Sbjct 210 TCCAGGTGGTGTCGTGGTGCTTGATAAGCATTCCGGGCTGAATAGCGGCGCGGCATACTG 151
Query 30128 TCTGTGTACCGTAGTGCTGGTTTACCAT 30155
| || || ||||| || || | |||||
Sbjct 150 TTTGGGTGCCGTAATGTTGATGAACCAT 123
Score = 116 bits (128), Expect = 1e-21
Identities = 81/92 (88%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 37693 GTGATGCTGCATTTATCGCCGCAGCCAACCCCGCCACCGTACTGGCGCTGTTGGATGAGC 37752
|| ||||| || |||||||| || |||||||||||||| ||||||||| ||||||||
Sbjct 35768 GTCATGCTAATTTCATCGCCGCGGCTAACCCCGCCACCGTGCTGGCGCTGCTGGATGAGA 35709
Query 37753 TGGAAGCCGCAGAGAAGCGCATAGCAGAACTG 37784
|||||||||||||||||||||||||||| |||
Sbjct 35708 TGGAAGCCGCAGAGAAGCGCATAGCAGAGCTG 35677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144945168730144
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