Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq4723 150 5e-32 >seq4723 Length=43540 Score = 150 bits (166), Expect = 5e-32 Identities = 157/194 (81%), Gaps = 14/194 (7%) Strand=Plus/Minus Query 37606 ttttttAAAGCGTACTTCCACCAAGAACCAGACCTAACCAACTCATTGCTGACACTCTGT 37665 |||||||||||| | | ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 33139 TTTTTTAAAGCGCATTACCACCAAGAACCAGACCCAACCAACTCATTGCTGAATATCTGT 33080 Query 37666 GGATACGGTTGTCTAGTGCGCTTTAAAAAAGAAAACCCAGCATCAATGGCTGGGCTTCGT 37725 || |||||| || |||||||||| |||||||||||||| ||| ||||||| ||||||||| Sbjct 33079 GGCTACGGTGGT-TAGTGCGCTTCAAAAAAGAAAACCC-GCA-CAATGGC-GGGCTTCGT 33024 Query 37726 G-ATATGAG---CGGCATGTATTGTTGGCGC-AATCCACGCCTGAT-TTGCTCATGAATG 37779 | | ||| | ||||| ||| |||| ||| | || |||| || |||| | ||||| Sbjct 33023 GAAAATGGGCGACGGCAAGTA--GTTGACGCTACTCGCCGCC--ATCTTGCCCGTGAATA 32968 Query 37780 CGGTCACGAACAAA 37793 ||||||||||| Sbjct 32967 GACTCACGAACAAA 32954 Score = 123 bits (136), Expect = 7e-24 Identities = 132/173 (76%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 31012 ATGCTGCTTGCTGTTCTTGAATGGGGTGTCGTTGACGACGACATGGCTCGATTGGCACGA 31071 |||||||| || | | || ||||| || |||||||| ||||||||| | | || || Sbjct 39246 ATGCTGCTGGCAGAGTTGGAGTGGGGCGTAGTTGACGATGACATGGCTAGGCTAGCGCGG 39187 Query 31072 CAAGTTGCTTCGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA 31131 ||||||| | ||||| || ||||| |||||||||||||||||||| || || ||| Sbjct 39186 GAAGTTGCCGGTCTGCTCACAAAGAAAAATCGCCCGGCGGCAACCGAGCGATCAGATCAA 39127 Query 31132 ATCCAGATGGAATTCTGAG-GTCATTACTGGATCAATCCACAGGAGTAATTAT 31183 ||| || |||||||| || ||||||||||| ||||||||||||||| Sbjct 39126 ATCACCATAACATTCTGAGACGAATAACTGGATCAATTCACAGGAGTAATTAT 39074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132672411106020