Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq4723 684 0.0 seq9686 286 1e-72 >seq4723 Length=43540 Score = 684 bits (758), Expect = 0.0 Identities = 649/829 (78%), Gaps = 0/829 (0%) Strand=Plus/Minus Query 12392 AGGTTTCATGCTGCCGCCTTTTGCCTGAGGAATCCGAGCGCCTTAACGGCTTCGATTTGG 12451 |||| ||||||||| ||||| ||| | ||||| ||||| || || ||||||||||||||| Sbjct 1613 AGGTGTCATGCTGCGGCCTTCTGCTTAAGGAACCCGAGAGCTTTGACGGCTTCGATTTGG 1554 Query 12452 GTAAGTTCAGAGGAATCGCGAATTTCGCGACGGAATATTTTCGAACAAAGAGGCAGCAGG 12511 || | || || || |||| ||||||||| ||||| || || || || |||||| Sbjct 1553 GTCAACTCGCCTGAGTCTTGAATGGTGCGACGGAAGATTTTTGAGCAGAGCGGTAGCAGG 1494 Query 12512 TCTTCATCCCATGTTTTATTCATGGCGATGAGTACGTCGTTAATTTCTTTGATGGTGGCA 12571 ||| ||||||| || |||||||||| || ||| | |||| | |||||| | || | Sbjct 1493 TCTGCATCCCAGGTCTTATTCATGGTGACGAGCAAATCGTCGACTTCTTTCAGCGTTTCC 1434 Query 12572 ATATCTGCCGGGGTGATATCGCGCTCAGGCTGCCTTTCAGCGGCGAAGTTAATACCTTCC 12631 ||||| | | ||||| |||||||| | || || ||||||||||| ||||| Sbjct 1433 GGTGTAGCCGGTGAAACGTCGCGTTCAGGCTGACGCTCGGCAGCGAAGTTAATGCCTTCT 1374 Query 12632 TCTCCCTCGGTATTAACATAGTCAATTGCTGCATCGAGTCGCTCACGGCGCGGCCAGTAT 12691 || || ||||| || |||||||| || || ||||| || || || ||||||||||||||| Sbjct 1373 TCGCCTTCGGTGTTCACATAGTCGATAGCGGCATCAAGACGTTCGCGGCGCGGCCAGTAT 1314 Query 12692 TTGGCAGCCTGCTTCACTACAGTCTTGAGCATCATCTGCTCTTCATCGGTTACCCACGGG 12751 ||||| ||||| ||||| || |||||||| |||||||||||||| |||||||||||||| Sbjct 1313 TTGGCTGCCTGTTTCACGACGGTCTTGAGGATCATCTGCTCTTCGTCGGTTACCCACGGA 1254 Query 12752 CATTTTTTGCTGTTGTCAGTTTTGTACTTCTTCCATGCTTCAGACCGGTCACGTATTGAA 12811 ||||||||||||||||| | |||||||||||||| ||||| || |||||||| |||| Sbjct 1253 CATTTTTTGCTGTTGTCGGACTTGTACTTCTTCCAGGCTTCCGAGCGGTCACGGATTGCG 1194 Query 12812 TAAATGTCTTCAATGCGCATGGTGTGCGTCAGATAGTCGCCATCGTCCGTTTTCACAACA 12871 ||||| | || |||||||| ||||| || || || || || | || ||||| || Sbjct 1193 TAAATAGCGTCGATGCGCATTGTGTGAGTGAGGTAATCACCGCCATCTGTTTTTACCGTT 1134 Query 12872 ACATAAGCGCCGACAACCTCTCCGCGCTGCTCTTTGGTGTCAAACTCGCTATAGATGTGA 12931 ||||| || || || | || ||||||||||||| ||| ||||| ||| | ||||||||| Sbjct 1133 ACATACGCCCCTACGATGTCGCCGCGCTGCTCTTCGGTATCAAAGTCGTTGTAGATGTGA 1074 Query 12932 ACCGGCGGCTTATCGAGACCCTCCCGGCGGAACTGGTCATTTTTACGGACGATTGATGAC 12991 ||||| ||||||||||| ||||| |||||||||||||| || ||||| || || | ||| Sbjct 1073 ACCGGTGGCTTATCGAGCCCCTCACGGCGGAACTGGTCGTTCTTACGAACAATCGCCGAC 1014 Query 12992 TGGCACCACTTAATTGCCCCTGACTGCTGGGCAATATGCATTAGCCCCATATAGCTTATG 13051 ||||||||||| || ||||| |||||||| || |||||||| || ||||| ||||| ||| Sbjct 1013 TGGCACCACTTGATCGCCCCCGACTGCTGAGCGATATGCATCAGGCCCATGTAGCTAATG 954 Query 13052 TCGAGGCAAATGGCTCCTTTCCGTGGAACCAGATAGGCCAGCTTCTGCGCCGGGTTAAGC 13111 |||||||| ||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 953 TCGAGGCAGATGCTGCCTTTACGTGGCACCAGATAAGCAAGCTTCTGCGCTGGGTTGAGC 894 Query 13112 GTGATGCCAATCGCCGCAACGTTCATGATCGCGCTGCGGGTACTGGTCGTGTTATTCATT 13171 | ||||| || ||||||||||| ||||||||| | | |||||| || ||| | | | Sbjct 893 GAAATGCCGATAGCCGCAACGTTGATGATCGCGTTCTGCGTACTGCTCTGGTTCTGGAAT 834 Query 13172 GCAGTCTTGGCGAGATAGTCGTTATTGGCGAATATCTGCATCGCGAACT 13220 ||| |||||||| |||||||| | |||| ||| || ||||||| Sbjct 833 GCAACTTTGGCGAGGTAGTCGTTGCTTTGAAATAACTGGATGGCGAACT 785 Score = 515 bits (570), Expect = 1e-141 Identities = 524/683 (77%), Gaps = 0/683 (0%) Strand=Plus/Minus Query 11512 TTTCACCTCCATTGTTCGCCGAAGGTGAAGCCAATCTCTGCAAGCGCCATGTCCATTTTT 11571 ||||| |||||||||| || | |||||||| || || ||||||||| ||||| || Sbjct 2287 TTTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTC 2228 Query 11572 TCAATGAACTCTGGCACCGCTTCCGTGAAGTCTTCCATGTACTTTTCATCACGCTCGACA 11631 || ||||| || |||||| || || || ||||||| || || ||||| ||||| Sbjct 2227 TCGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACC 2168 Query 11632 ACGACATGATGAAGTCCTTCGCGCCTCATTCGCGGGTCATAATTCGAAAAGTACCAGGCG 11691 | |||||| || | |||||||| |||| || ||||| ||||| | |||| |||||||| Sbjct 2167 AAGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCG 2108 Query 11692 TCCTTGCCGGTTACCCACATGCTGAACTGCACCTGAGCCATGTAGGCCGACTTAATGGCT 11751 | ||| ||||| | |||||||||| |||| ||||| |||||||| || ||||| ||||| Sbjct 2107 TTCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCC 2048 Query 11752 TCAAATCCGCCGAGGCGGAATTTCATGAAGTCGCGAGAAGTGAAAGGGCACTTAAGCTCA 11811 ||||| ||||| || | |||||||||||||||||| || |||||||||||||| || || Sbjct 2047 TCAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCG 1988 Query 11812 AGCCCGCGGCCATCACTGCAAAGCCCGTCCGGTGAGCATGCAGTGCGCATGGTTTCGTCC 11871 || || | | | |||||| |||||||| || ||||| || |||||||| | ||||| Sbjct 1987 AGGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCG 1928 Query 11872 TTGTAGATAATCGGCGACTCGGTTACCTGAACGCCGGCAGTAAATTCAAACAGGGCTCTT 11931 | ||| ||||||||||| | || |||||||| || || || || |||| || Sbjct 1927 CGGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGC 1868 Query 11932 GCGTCATCCTCGTATTGTTTGCCCCATGCCAGAGCCCTGGCATTAACTTCAGGAGCTACG 11991 ||||| || ||| ||||||| ||||||||||| | | |||| |||||||| || | |||| Sbjct 1867 GCGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACG 1808 Query 11992 CCGGTACACACCTCAGCGAGAAGGGTGTGGAAGTAAGACATCTTCATGTCCGGCCATTTT 12051 ||||| || || || || || |||||||||||||||||||| |||||||||| ||| || Sbjct 1807 CCGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTC 1748 Query 12052 TTACCTGAGCGTGGTTTTGATATGACGTTATGAACATCTGATGCGGTGATAACTCCGAGG 12111 || || ||||| ||||| || || ||||| || || ||||| || || || |||||| Sbjct 1747 TTCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGG 1688 Query 12112 CGCAGCCTCTGCCACGCCTCATCTCCCTGTTCGACCGTGAGCACATCTATCCCTGTGCGC 12171 |||||||| |||||||| ||||| || || |||||||| || || || || || || Sbjct 1687 CGCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGG 1628 Query 12172 TCAAGGATGATTGCGGGAGTCAT 12194 | ||||| ||| | || ||||| Sbjct 1627 GCCAGGATAATTTCAGGTGTCAT 1605 >seq9686 Length=37809 Score = 286 bits (316), Expect = 1e-72 Identities = 608/901 (67%), Gaps = 24/901 (3%) Strand=Plus/Plus Query 29469 TTCCTTTGGGCAGCCACCGCATTTACCAAAAAAGGCAGGACAGTGCTTGGCCAGGCTGAA 29528 ||||| ||||| | | ||| || || ||||| | | || ||||| ||||| ||| Sbjct 5065 TTCCTCTGGGCGTCGAACGCTTTCGAGAAGAAAGGGCGTTCCGTTCTTGGGCAGGCGGAA 5124 Query 29529 GAGGTAATGATGCGTGCCGGCGGATGGCAAAAGGCCCGAATGGAACAGCAGATGAATGAG 29588 || || |||||| || || |||||||| || || || ||||| ||||| ||| | || Sbjct 5125 GAAGTTGCGATGCGGGCAGGTGGATGGCAGAAAGCGCGCATGGAGCAGCAAATGTACGAA 5184 Query 29589 TGGTTCGGGCACAAGCCGGACTTCATCATCACGCTGGCTGCTGACTATTGCCTGCAATGC 29648 |||||||| |||| | ||||||||||||||||| || || || || |||||| Sbjct 5185 TGGTTCGGCAGGGTGCCGCAGTTCATCATCACGCTGGCAGCAGATTACTGTTCGCAATGT 5244 Query 29649 TCCGATTTAGACTTCTGCGCACTGGTAGAGCATGAGCTTTATCACATCGCCCAAGAAGTG 29708 |||||| | || |||||||| ||| ||||||| |||||||||||||| ||| | Sbjct 5245 TCCGATCTGGAGTTCTGCGCCCTGTTAGAGCACGAGCTTTATCACATTAGCCAGGCGACA 5304 Query 29709 GATGAGTTTGGCTCACCGAAGTTTTACCGCGACTCAGGTAAGCCGAAGCTTTGCATGCGC 29768 ||||| |||||| | |||||| || ||| | ||| | ||| || || |||| Sbjct 5305 GATGAATTTGGCGCGCCGAAG--TTCACGC-AGGAAGGCATGCCAAAACTGAAGCTGCGT 5361 Query 29769 GGACATGATGTTGAGGAATTCGTTGGCGTTGTCCGTCGATATGGCGCAAGCGCTGATGTC 29828 || || ||||| || || || || || || || || || || || || ||| ||| || Sbjct 5362 GGCCACGATGTGGAAGAGTTTGTCGGTGTGGTTCGCCGCTACGGTGCGAGCCGTGAAGTG 5421 Query 29829 CAGGAATTAGTAGATGCGGCAAATAAACCAGCAGAGGTGGCCCATCTTGATGTTGCCAGA 29888 |||||| | | |||||||| ||| | ||||| ||||| || ||||| ||| |||||||| Sbjct 5422 CAGGAAATGATTGATGCGGCGAATCAGCCAGCGGAGGTTGCTCATCTCGATATTGCCAGA 5481 Query 29889 GCATGTGGTACATGCCTCATGAAGCTGGCGT-AAAC----CTTTATTAACATTGTCATGG 29943 || || || || ||| | || ||||| | |||| || || ||| | |||| Sbjct 5482 GCTTGCGGGACTTGCATGCTGCGACTGGCTTGAAACTGGACTGTA-TAAGA--CGAATGG 5538 Query 29944 AGGAAACCGATGGCAGCATTATCGACAGAGGTTAAATCCTTCATCGTCCAGTCATTGGCT 30003 | | ||||| |||||| | || || ||| |||||||||| |||| | || Sbjct 5539 TG---ATTTATGGCTGCATTAAAACCTGATGTGAAAGCCTTCATCGTTCAGTTGCTTGCG 5595 Query 30004 TGCTATGAGCCACCCACAAAAGTAATTGAGCTTGTAAAGGCTGAGTTCAATGTGGAGGTA 30063 |||||||| | || | |||| | ||| ||| | |||||| | || | Sbjct 5596 TGCTATGACACGCCATCGCAAGTGGTCGAGACTGTCCAAAAAGAGTTCGGCATCAAGATC 5655 Query 30064 TCGCGCCAGCA-----AATATCTCAATACTGCCCTGGTAACGCGATGGCAGAGAAGCTCA 30118 | || ||||| ||| | | || | || || || | | ||| |||| Sbjct 5656 ACCCGGCAGCAGGCCGAATCGCACGATCCGACC-----AAGGCCAGCGGTAAGACGCTCG 5710 Query 30119 GCCAGAAGTGGGTAGATCTCTTTAATAGCACTCGCTTGCGATTCCAGACGGAAATATCTG 30178 |||||||| | || | || | || || || |||| ||| |||| | Sbjct 5711 CGAAGAAGTGGATCGAGATGTTCCACGCGACGCGAGAACGCTTCCTGACCGAAACCAGCG 5770 Query 30179 ATATTCCGATTGCTAACAAAGCTTACCGGCTTCGCGCGCTGGACAGAATGGCGGCAAATA 30238 | |||||||| || |||||| | || || || |||| ||| ||| | ||||| | || | Sbjct 5771 ACATTCCGATCGCCAACAAATCCTATCGCCTCCGCGTGCTTGACCGTATGGCTACCAAAA 5830 Query 30239 CTGAGAAGATGCGCAACTTCGCGCTTACTGCTCAGTTAATTGAACAGGCTGCTAAAGAGT 30298 | || | || |||||| | || || || ||| | ||||||||||| || |||||| Sbjct 5831 CCGAAGGGCTGAAGAACTTCTCCCTGACGGCGCAGCTGATTGAACAGGCCGCGAAAGAGG 5890 Query 30299 GCGGCGATGCATACACCAATAAGCAGAAAGTAGAGCATACCGGTAAAGATGGTGGACCCA 30358 ||||| || ||||||||||||| |||||| ||| |||||||| ||||| || || | Sbjct 5891 TGGGCGACGCTTACACCAATAAGCTGAAAGTGGAGAGCACCGGTAAGGATGGCGGCCCGA 5950 Query 30359 T 30359 | Sbjct 5951 T 5951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152123996470154