Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq9686 1068 0.0 >seq9686 Length=37809 Score = 1068 bits (1184), Expect = 0.0 Identities = 1769/2527 (70%), Gaps = 85/2527 (3%) Strand=Plus/Minus Query 26972 GCTGATTTTTTCCAGGTCATTTTTTGCCAGTAAGTTGGCATGGGCGCATTCCGTGGCCGC 27031 ||||| ||| | ||||||||||| |||| | ||||| || || || || ||||| Sbjct 37801 GCTGACTTTAACGAGGTCATTTTTCGCCATGAGATTGGCGTGAGCACACTCGAACGCCGC 37742 Query 27032 AGCCAATCCGGTGGCGC--TGTTTACGTCTCGATCTGCGAAAATAATCAAATTCTTCACA 27089 ||| || ||||| || || ||| ||| || ||||||| || | || || Sbjct 37741 CGCCTGACCCGTGGCAGAATGCTT--GTCCATATCAGCAAAAATAACCAGGTGTTTTACC 37684 Query 27090 CCTGCTGGAACACGAAATTTCTTCATGAATCCGCTGGTCATGGTGGCCCAGGTGTTAACG 27149 || || ||| | || |||||||||||||| |||| |||| |||||||| ||||| Sbjct 37683 CCCGCCGGAGCGCGGAATTTCTTCATGAAATTGCTGTTCATCACCGCCCAGGTATTAACC 37624 Query 27150 TGGTACAGCTGCTTGCAGGAAAGAGCGGTTTCGATGCCCTCTGCAATACCCAGCGTCGTA 27209 ||| | ||| | |||||| || || |||||||||||||| || || |||||||| | Sbjct 37623 CCGTAGATCTGATAGCAGGACAGCGCCGTTTCGATGCCCTCCGCGATTCCCAGCGTTGAG 37564 Query 27210 GAAATCGGGAACATTCGGATAGCTACGGAACGCGCGTGATCCAGATAGCTTTCCTCCTGA 27269 || | ||| ||||| ||||| ||||| || || || | || |||||| |||| ||||| Sbjct 37563 GACACCGGAAACATGCGGATGGCTACAGAGCGGGCATATTCGAGATAGTTTTCTTCCTGC 37504 Query 27270 AGAGACTTCTGGCGCTTCGCCCCGGCCGAATCTTTCAACTGAGCTTTGCGGTTTCCGTCC 27329 || ||||||||||| || || | || |||| | |||||||| | || || Sbjct 37503 AGGGACTTCTGGCGTTTGGCGCTT------TCGCCCAACGGCGCTTTGCGTTCGCCTTCA 37450 Query 27330 AACAAGGTTCTGTGCAGATAGCAAAGTTCACCTTTGTCATCCGTTGCGAGCGAATACAGT 27389 | || || | ||| || ||||| | || |||||||| || || ||||| | || || Sbjct 37449 AGTAACGTCCGGTGGAGGTAGCACAACTCTCCTTTGTCGTCTGTGGCGAGGGCGTAGAGA 37390 Query 27390 GACTGGTAAATTTTTCCGCCGTAACGCTCCTTTTCGTTGAATCTGATGGCCTCTTGCGGA 27449 ||||||| || || | | ||||| ||||||| ||| ||||| || || || Sbjct 37389 ACATGGTAAACCTTGCCTGCATGACGCTGCTTTTCGCAGAACCTGATCGCTTCAGCGGGT 37330 Query 27450 AGGGTATAAATCCCACGCGCAATGAGATAGTCGGCGCCCGAGGTCCCACGCAAAGGTGAC 27509 | | | ||||| ||| ||||||| | || || || ||| || ||| | | Sbjct 37329 AATTTGTTGATCCCGCGCTGGCGGAGATAGCCAGCACCATTCGTACCAGCCAGAGGCGGC 37270 Query 27510 AGTCTCGAAAACTTGCTGAGCACCCTTTTTTGAAGGCT---GACTGCGCTACTCGTAGCC 27566 | | ||||| ||||||| |||| | | || | | ||| |||| | || | Sbjct 37269 AACTTTGAAAATTTGCTGATTACCCGCTGGCGCAGTTTCGCGGCTGAGCTAGT--TA-CA 37213 Query 27567 GGAATTTTCAGTCGTGTGAAGGTG-TTGCCGATTAGCTCGTCGATTTCGCGGCACACCAC 27625 || |||||| ||| ||| || ||||| | |||| ||| | |||| || | | Sbjct 37212 GGGATTTTCTCTCGC-TGATAGTCATTGCCAAGGAGCTTGTCCACTTCGGAACAGATTGC 37154 Query 27626 GTTAAATGGTTTG---CCCTGAGTTTCGGTAATCAGCTTAAGACCGTCACCGCTGCCGCA 27682 | |||| |||| | || || ||||| |||||| | |||||||||| | ||||| Sbjct 37153 ATGGAATGCTTTGTTGCTTTGCGTCAGGGTAAGCAGCTTCATACCGTCACCGTTTCCGCA 37094 Query 27683 AGTGCAGATCCAGGTTCCGGCGCCGTCGCGGTCATCGATACGGAATTTACCGATTGAATC 27742 | || ||||| ||||||| ||||| | ||||| || ||||| || || | | Sbjct 37093 AACACATATCCATGTTCCGGTACCGTCATGATCATCAATGCGGAACTTTCCACGGGCACT 37034 Query 27743 ACACAGCGGGCATTTCCCTTTGTAGTGGTTTTTCCCAGTGATAGGCGGCAATCCGTAGTG 27802 || | |||||||| |||||||| ||||| ||||| ||||| || |||| |||||| | Sbjct 37033 GCATACCGGGCATTCACCTTTGTAATGGTTCTTCCCGGTGATCGGTGGCAGTCCGTAATA 36974 Query 27803 TTCAAAAATCATCGCCCACTGGCCCTTTGC------TGCT-TCTGC-CG----TCTTCAT 27850 || ||||| | ||| ||||| ||||| |||| ||| | || ||||| Sbjct 36973 CTCTAAAATTTCTGACCAGTGGCCTTTTGCCGCTTCTGCTGTCTTCACGCTGTTCTTCTC 36914 Query 27851 GCGCGCTTACC-----TAAATGCTGTCTGA--TTTCATTTAAATGAC-------GATTCA 27896 | || ||| ||| | || ||| ||| | ||||| | | || Sbjct 36913 CCAAGCGTACTGCGAATAATTTCTACCTGGCGTTTTGCATCAATGATCCTGCTGGTTGCA 36854 Query 27897 CCTGCTGAACACTT--ATCTGT-TC------TG-----GCTGAACTTCTCGCTGAGCCTT 27942 ||||| | ||| | ||| | || || ||||| || || || ||| Sbjct 36853 CCTGC--ACCACCTGCATCAGCATCGAACGATGCAGGCGCTGATTTTGCCGATGG--CTT 36798 Query 27943 TTCTCTTTGTTTGGCAAAGGCAATTTGCTTGTGCTTGATGAAGTTCAATACCGCAGGAGT 28002 ||| | ||| || || || ||||||| ||||| |||| || || || || Sbjct 36797 GTCTTTACCTTTTGCGAACCGGATCAGCTTGTGTCTGATGTAGTTGTTCACTGCGGGGGT 36738 Query 28003 AATTTCCATAGGGTAGTCGCTGAGCTCACGCGGCCAATGGCCGAAGCGTTCCCTGAAAGT 28062 ||||||||| ||| | |||||||| || |||||| | | ||| ||| | | | || Sbjct 36737 AATTTCCATTGGGAAATCGCTGAGACCATTCGGCCATTCGTTGAATTTTTCTCGGTAGGT 36678 Query 28063 GTTTGCGCACCAGCCGTCGCTGACAGGTTTTTTCCCCTGCGAGATACGCTGACGTTGGTA 28122 | || ||||| || || |||||||||||| ||| ||| ||| || || || || Sbjct 36677 ATGAGCACACCACCCATCACTGACAGGTTTT---CCCATCGATGCACGGTGGCGCTGATA 36621 Query 28123 GAACTTGAGCTGGCTCCACCAGGCCTGTTTCTCGGCCTTCGTGGG---CTGTT-GCCCAT 28178 || |||| ||| |||||||||| |||||| || | || ||| || || |||| | Sbjct 36620 AAATTTGATCTGACTCCACCAGGACTGTTTGTCCGTTTTGGTGTAACCCTTTTCGCCCTT 36561 Query 28179 CACCTCCCAGCTTTTTGAGTTTGCGCCGCGTGTCTGTATCGACGTCATCCCCCGCCAGCG 28238 | |||||||||| || ||| |||| || || || || || || || |||||| Sbjct 36560 ----TTTGAGCTTTTTGATATTCCGCTGCGTATCGGTTTCAACATCCTCACCGACCAGCG 36505 Query 28239 GCTTATGACCACACTTCGGGCAGACATATACGCCTGCAGGCTTCATAAAGTGGCA-CTGT 28297 ||||| |||||| ||||||||||| || || |||||||| ||||| || ||||| | | Sbjct 36504 GCTTAAAACCACATTTCGGGCAGACGTACACCCCTGCAGGTTTCATGAAATGGCATCCAT 36445 Query 28298 GAACATTCGTGTGGCAGCTTCTCTGCCCGTTCCTCAGCTACACGTCGGGCCCCTTCTTCC 28357 | ||||| | || || || || |||| |||||||||||||| || | |||| | Sbjct 36444 GG-CATTCTTTCGGAAGTTTTTCCTCCCGATCCTCAGCTACACGGGCAGCGGCCTCTTTC 36386 Query 28358 ATCCCGTCTGATTTGCCAACA-AGATCGTCATATTCGATAGTGTCCGGAAAACCCAGTCG 28416 || || || | ||| | | || ||| || || |||| ||| ||||| ||||| || Sbjct 36385 ATGCCATC-GCTTTTCGACGGGAGGTCGCTGTACTCAATAGCGTCAGGAAATCCCAGGCG 36327 Query 28417 GTGTACGGTGCCGCTGTGATCGAAGATGAGGCAGGAATCTTTACCTGGAGCGATGCGCAG 28476 || |||||||| ||||||||||||||||| |||| |||||| ||||| || |||| || Sbjct 36326 ATGGACGGTGCCACTGTGATCGAAGATGAGACAGGCATCTTTGCCTGGTGCAGTGCGAAG 36267 Query 28477 GCCACGCCCGAGCGCCTGCAGCCAGCGTATTTCGCTCTTTGTTGGCCGGGCATAGATAAT 28536 ||||||||| || ||||||| |||||| |||||||| || || || ||||| || || | Sbjct 36266 GCCACGCCCCAGTGCCTGCAACCAGCGAATTTCGCTTTTGGTAGGGCGGGCGTAAATCAC 36207 Query 28537 GCAGCGAACGTCGCTGTCGAACCCAGCCACCAGCACGCCTACGCTAACGATGATTTTTGT 28596 |||||||||||| || ||||| || |||||||| || || ||||| | ||||||||||| Sbjct 36206 GCAGCGAACGTCACTATCGAAGCCCGCCACCAGTACACCGACGCTGATAATGATTTTTGT 36147 Query 28597 CGCGCCAGTCTCAAAGCGATGGATTATGGTCTGACGTTCTTCAACCGGAGTGTCGGCAGT 28656 ||||||||| |||||||| ||||| || || |||||||| ||| || ||||| Sbjct 36146 CGCGCCAGTTTCAAAGCGGTGGATCATCAGTTGTCGTTCTTCGTGCGGCGTTTCGGCCAC 36087 Query 28657 CATCACCTCAGCATTAACGCCAGCCAGGTTGAACTGGATGGTCAGGTAATTGGCATGAGC 28716 ||||||||| ||||| ||||| || ||||||||| || || | ||| ||||| || || Sbjct 36086 CATCACCTCGGCATTCACGCCCGCTTTGTTGAACTGCATCGTGACGTAGTTGGCGTGGGC 36027 Query 28717 TACATTGACGCAGAAAGCTATAGTCGGCAGATCGCGTCCATTCTCCAACCAGTTCTGGAC 28776 |||||| ||||| || | ||||| || || | || || || |||||| | ||| Sbjct 36026 CTTATTGACACAGAACGCCACTGTCGGAAGGTCCTGCCCGTTACGCAGCCAGTTATCGAC 35967 Query 28777 GATATCTCCCACCAGCGTGGAGCCGCACATAATTTCAGCCAGCTGTGCCTCGTTGTAGTC 28836 || || || |||||| || |||||||| |||||||||| ||||||||||| |||||| Sbjct 35966 AATGTCGCCGACCAGCTCCGATCCGCACATGATTTCAGCCAACTGTGCCTCGTCGTAGTC 35907 Query 28837 CTTGCCGTACTCAAGAGAGGATGACGTTTTAACCCCGTTAAGATCCGGCTTGGTTGGTGC 28896 |||| ||||| | || | | ||| ||||| || || ||||||||||| || || || Sbjct 35906 GCTGCCATACTCCATCGACGCTTTCGTCTTAACGCCTTTCAGATCCGGCTTTGTCGGGGC 35847 Query 28897 GTAAAACTCATAATTGCTCAGGTCACCGCGCTGAATCAGCTCAGCGATGGTGGTCGGTTT 28956 || ||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||||| Sbjct 35846 ATAGAACTCGTAATTACTCAGATCACCACGCTGGATAAGCTCGCCGATGGTGGTCGGTTT 35787 Query 28957 GATGAGTCGGTCATAGTATTTACCCAAGAACGGGGAGAACGGGGTACCCGACAGACCAAT 29016 ||| || || | ||||| || |||| ||| || || |||||||| || ||||| || || Sbjct 35786 GATCAGGCGCTGGTAGTAATTCCCCAGGAAAGGTGAAAACGGGGTTCCGGACAGGCCTAT 35727 Query 29017 GACTTTCAC---GCCTTTAGCGCGCAGGCGATCAATGTCCTGCAGGATGCGtttttttCG 29073 || ||| | | || | | | || ||||| || | ||| ||||| ||| || Sbjct 35726 AACCTTCGCTTTGGTTTCCGTGGTGATCCGCTCAATCTCTTTCAGAATGCGGCGTTTGCG 35667 Query 29074 GAGGTGCGCTTCGTCGATGATCAGGAGATCGATGTTGTCTGGGAAGACGCGGCGAATGAG 29133 || || ||||||||||| ||||| |||||||| | | ||||| | ||||| || || Sbjct 35666 CAGATGGGCTTCGTCGATAATCAGCAGATCGATATCCTGCGGGAATTCCCGGCGGATCAG 35607 Query 29134 TGTATCGGCGCTGGCAATTTGAATTTTCCGAGCCGGATCGTAGTTGGGATGATCGGCCCA 29193 || |||||||||||||| || || | | | || || ||||| || ||||| ||| Sbjct 35606 CGTGTCGGCGCTGGCAATCTGGATCTGCAGGCTGGGGTCATAGTTCGGGTGATCACGCCA 35547 Query 29194 GATATAACTAATCTCATCACCGGGCAACCCATATTCAACAAAACGATTCGCTGTCTGGCC 29253 |||| | || |||| || | || | ||||| | | |||| || | || ||||| Sbjct 35546 GATAAAGCTGATCTGGTCTTCCGGAAGGCCATACTGAGCAAAGCGCTGTGCGGTCTGATT 35487 Query 29254 AATCAGAATGGTATATGGCGCACAAAAGAGTACACGCATACCACGGCTGACGAACCCGGC 29313 ||||| ||||| || || || ||| || || |||||||||||||| || | || | Sbjct 35486 GATCAGGATGGTGTAAGGGGCGACAAACAGAACGCGCATACCACGGCTCACCAGACCATC 35427 Query 29314 GACAATGAAAGCGGCCAGCCCCGTTTTACCGCTGCCGGTCGGGGAGTACACCATGAAGGT 29373 ||| ||||| |||||||| ||||| |||||||||||||| |||| |||||| | Sbjct 35426 TGCAACAAAAGCAGCCAGCCCGGTTTTGCCGCTGCCGGTCGGCATATACATCATGAACGA 35367 Query 29374 TTCTGTA-TCCTTCCAGTTACGGCGCAGCTGGTTCAGCGCTCGTTCCTGTGCAAAATTCG 29432 ||| ||| ||||||||| |||||||||| ||||||||| ||||||||||||||||| | Sbjct 35366 TTC-GTACGCCTTCCAGTCACGGCGCAGCATGTTCAGCGCGCGTTCCTGTGCAAAATTTG 35308 Query 29433 GTGTGAT 29439 ||||||| Sbjct 35307 GTGTGAT 35301 Score = 118 bits (130), Expect = 3e-22 Identities = 119/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 26872 CGCATTACGCAGCCGC---CTTTTTCTTGAAGAAAACCACCTCACGAACCTGATCGCCGT 26928 ||||||| || ||| | || ||||| ||||||||| ||||||||||||||| |||| Sbjct 163 CGCATTATGCCGCCTCTCTCTGCTTCTTATAGAAAACCAGCTCACGAACCTGATCACCGT 104 Query 26929 TTATGAGCATGTCGTTAAAATCCCCGTTATCCGGGTAGTAGATGCTGATTTTTTCCAGGT 26988 | |||||||||||||| ||||| |||||||| || || | ||||| ||| | |||| Sbjct 103 TCATGAGCATGTCGTTGAAATCACCGTTATCAGGCCAGCGTACGCTGACTTTAACGAGGT 44 Query 26989 CATTTTTTGCCAGTAAGTTGGCATGGGCGCATTC 27022 ||||||| |||| | ||||| || || || || Sbjct 43 CATTTTTCGCCATGAGATTGGCGTGAGCACACTC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124627007723452