Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 87.8 2e-12
>seq6222
Length=12937
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 28552 AAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTT 28611
|||||||||| || || || || | ||||| || || |||||| |||| || ||||
Sbjct 5334 AAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTT 5275
Query 28612 CAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670
| || || | | | |||| || |||| || |||||||| || | ||| ||
Sbjct 5274 CGGATACCATTGAAAACGTCAAAGCCAAAATTCAA-GACAAAGAAGGTATCCCCCCTGAC 5216
Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730
|| || | | || || || ||||| |||||||||||| | || || | |||||
Sbjct 5215 CAGCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTAC 5156
Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765
|||||||| |||||||| || ||||| |||||||
Sbjct 5155 AACATTCAGAAAGAATCCACCCTGCATTTGGTATT 5121
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| || || ||||| || || || || ||||||||| ||| || || ||
Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | ||||| |||||| |||||||| || | || ||||||
Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| | | || || || ||||||||||||||||| || || | || || |||
Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| ||||||||||| || || ||| |||| | | || ||||| || ||
Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGGTAT 4875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425090461613391
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |