Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6222 87.8 2e-12 >seq6222 Length=12937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 28552 AAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTT 28611 |||||||||| || || || || | ||||| || || |||||| |||| || |||| Sbjct 5334 AAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTT 5275 Query 28612 CAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 | || || | | | |||| || |||| || |||||||| || | ||| || Sbjct 5274 CGGATACCATTGAAAACGTCAAAGCCAAAATTCAA-GACAAAGAAGGTATCCCCCCTGAC 5216 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || || | | || || || ||||| |||||||||||| | || || | ||||| Sbjct 5215 CAGCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTAC 5156 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||| |||||||| || ||||| ||||||| Sbjct 5155 AACATTCAGAAAGAATCCACCCTGCATTTGGTATT 5121 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| || || || || ||||||||| ||| || || || Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| |||||| |||||||| || | || |||||| Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || || || ||||||||||||||||| || || | || || ||| Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || || ||| |||| | | || ||||| || || Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGGTAT 4875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425090461613391