Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1628 187 2e-41 seq7016 168 4e-36 seq6222 111 1e-18 seq3468 87.8 1e-11 >seq1628 Length=19996 Score = 187 bits (206), Expect = 2e-41 Identities = 376/553 (68%), Gaps = 10/553 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 |||||||||||||| || || || || ||| ||| || | ||| | || | || ||| Sbjct 17554 GCAATTGGTATTGACTTGGGTACCACCTACTCTTGCGTGGGTGTATTCCAGCACGGCAAA 17613 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| |||||||| ||||| ||||| | || || ||||| || || | ||||| Sbjct 17614 GTAGAAATCATTGCCAACGACCAGGGTAACCGTACCACTCCATCCTACGTCGCCTTTACG 17673 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | ||| || || |||||||| ||| |||||| || || ||| || Sbjct 17674 GACACGGAGCGTCTCATCGGCGATGCTGCAAAAAATCAAGTCGCGATGAACCCTTCCAAC 17733 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | |||||||| ||| | | || || ||| || ||||| |||| || ||| || Sbjct 17734 ACCGTCTTTGATGCGAAACGTCTTATCGGCCGTCGATTCGATGACGCCACCGTGCAAGCT 17793 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 |||||| || ||||| || || || || || | | | ||||| | || ||| Sbjct 17794 GATATGAAGCACTGGCCGTTCAAAGTCATCAACGATAATACCAAACCCAAGATTCAAGTC 17853 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| || ||| || | || ||| |||| || || |||||| | | Sbjct 17854 GAGTACAAG--GGTGAGACCAAAGCCTTCTTCCCCGAAGAAATCTCGTCCATGGTTCTGG 17911 Query 474687 CCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACA-AGAAGTAACTGATGCAGTAA 474743 || ||| | |||| || |||| | ||||| || |||| | ||||| || Sbjct 17912 TAAAGATGCGAGAAACGGCAGAAGCTTA---CTTGGGCAGCAAAGTCTCCGATGCCGTCG 17968 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || || || || || || || ||||| || |||||||| || || || || || | | Sbjct 17969 TCACGGTCCCCGCCTACTTCAACGATTCCCAGCGTCAAGCCACCAAGGACGCTGGTACCA 18028 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || || | || ||||| ||||| || || || || || || || || | || |||| Sbjct 18029 TCGCGGGCTTGAACGTTTTGCGTATCATCAACGAGCCTACCGCTGCAGCTATCGCCTATG 18088 Query 474864 GTCTTGATAAGAA 474876 || | || ||||| Sbjct 18089 GTTTGGACAAGAA 18101 Score = 100 bits (110), Expect = 2e-15 Identities = 473/742 (64%), Gaps = 16/742 (2%) Strand=Plus/Plus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 ||||||| | || ||||| ||||| || ||||| |||| || || | || ||| || Sbjct 18320 GACGTCTCCGTACGGCTTGCGAACGGGCCAAGCGGACTCTGTCGTCCTCCACCCAAGCTT 18379 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | || ||| | || || || || ||||| || || | | | ||| ||||| | || Sbjct 18380 CGGTCGAAATCGACTCGCTGTTCGAAGGTATCGACTTTTACACTTCGATTACCCGCGCCC 18439 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 || ||||| |||| | || ||||| | || || || || ||||| ||| Sbjct 18440 GTTTCGAAGAGCTTTGCGCCGACCTCTTCCGCGCCACCATGGATCCTGTTGAGAAAGCCT 18499 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | | || | || ||||||||| | || | ||||||||| | || || || || | Sbjct 18500 TGCGCGACGCCAAGCTTGACAAAGCCTCGATCAACGAAATTGTTTTGGTCGGTGGCTCCA 18559 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783 | | || || ||| | ||||| || || || |||| || || ||| | | || Sbjct 18560 CGCGTATCCCGAAAGTGC-AGAAACTGTTGCAAGATTTTTTCAACGGCAAAGAACTGAAC 18618 Query 475784 GAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTT 475841 |||| | || || || ||||||||||| || || || || |||||||| || |||| Sbjct 18619 --AAGTCCATCAACCCGGACGAAGCTGTTGCTTACGGTGCCGCCGTCCAAGCCGCCATTT 18676 Query 475842 TATCAGGTCA---ATCAGACGAGAAACTAAATAATATTGTACTTGTT-GACGTAACTCCA 475897 | || | ||| || | | | | || ||| | || | ||||| | || Sbjct 18677 TGCACGGAGACAAATCCGAAGCGGTCCAAGAT----TTGCTCCTGCTCGACGTCGCCCCT 18732 Query 475898 CTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACT 475957 ||||| || ||| | || || | ||| || ||||||| | ||| | | ||||| Sbjct 18733 CTTTCGTTGGGTATCGAGACCGCTGGCGGTGTTATGACCCCCTTGATTAAGCGTAATACC 18792 Query 475958 CCTATCCCATGCAAAAA-ATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGT 476016 | ||||| ||| | | | | | | || | || ||| | || || || | || Sbjct 18793 ACCATCCCGACCAAGCAGACCCAGACT-TTCACAACGTATGCCGACAACCAGCCCGGCGT 18851 Query 476017 AACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAAC 476076 || ||| | | ||||| ||| | | || ||||| || ||| | || | Sbjct 18852 CTTGATTCAAGTATACGAAGGGGAACGCGCCATGACAAAAGACAACAACTTGTTGGGCAA 18911 Query 476077 TTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTT 476136 || | || |||||||| |||||||| ||||||||||||| |||||||| || || Sbjct 18912 GTTCGAACTCACCGGTATTCCGCCTGCTCCGCGAGGAGTTCCTCAGATTGAAGTCACCTT 18971 Query 476137 TGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAG 476196 ||||| || || || ||||| || || || | ||||| || || |||| |||| Sbjct 18972 CGATATCGACGCCAACGGTATCCTGAACGTCTCGGCTTGCGACAAGTCTACCGGCAAGGA 19031 Query 476197 TAAAAATATAACTATTACAAAC 476218 || || || || ||||| ||| Sbjct 19032 GAACAAGATCACCATTACCAAC 19053 >seq7016 Length=12204 Score = 168 bits (186), Expect = 4e-36 Identities = 371/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| |||||||| || || || ||| ||||| | ||| | ||| |||| ||| Sbjct 5344 GCTATTGGCATTGATTTGGGTACCACCTACTCCTGTGTGGGTGTATTCCAACATGGCAAA 5403 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||| ||||||||||| | || ||||| || || || |||| || Sbjct 5404 GTGGAAATTATTGCCAACGACCAAGGTAACCGCACGACACCTTCTTACGTGGCTTTCACC 5463 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | ||| || || || || || || | || | || || || || Sbjct 5464 GACACCGAGCGTCTGATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCGACCAAC 5523 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | ||||||||||| | | || |||||| ||| || || | || ||||| || Sbjct 5524 ACCGTCTTTGATGCTAAGCGTCTCATCGGTCGTCGTTTCGAGGACGCAACCGTCCAGTCC 5583 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 || ||| || ||||| || | || || | | ||| || || || | || ||| Sbjct 5584 GACATGAAGCACTGGCCCTTCGAAGTCATCAGCGATGGCGGCAAGCCTAAAATCCAAGTC 5643 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 ||| || | || ||||| ||| || | || ||| || |||| || ||||| | Sbjct 5644 GAATTCAAG--GGAGAAACCAAAACCTTCTTCCCTGAAGAAGTTTCCTCCATGGTCCTCA 5701 Query 474687 CCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||||||||| |||| || |||| ||| | |||||| || || | || || | Sbjct 5702 CCAAAATGAAGGAAACTGCTGAAGCT--TATTTGGGACAAACTGTCACCAACGCCGTCGT 5759 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || || || || || || ||||| || |||||||| || || || || || | || Sbjct 5760 CACAGTCCCCGCTTACTTCAACGATTCCCAGCGTCAAGCTACAAAGGACGCCGGTACCAT 5819 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || || | || || | ||||| || || ||||| ||||| ||||| |||| || || Sbjct 5820 CGCTGGCTTGAACGTCCTGCGTATCATCAACGAACCCACAGCTGCCGCTATTGCCTACGG 5879 Query 474865 TCTTGATAAGAA 474876 | | || || || Sbjct 5880 TTTGGACAAAAA 5891 >seq6222 Length=12937 Score = 111 bits (122), Expect = 1e-18 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| |||||||| || || || || ||||||||||| ||||| ||||| ||||| ||| Sbjct 4494 TCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTG 4553 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| |||||| |||||| || |||| | | || || ||| || || Sbjct 4554 TCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAA-AGTGAT 4612 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| | |||||| ||||| ||||| Sbjct 4613 GGTTTTGCCGGTCAAAGTCTTCACGAAGATTTG 4645 Score = 111 bits (122), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||| |||||| ||| || || || || |||| || || Sbjct 4655 ACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGT 4714 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||| | ||| || || || ||||| | ||||||||||||||||||||| || Sbjct 4715 ACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCC 4774 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || |||||||| || |||||| |||||||| || | || ||| | Sbjct 4775 TTCTTTATCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAA 4834 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || |||||||| || ||||||||||| Sbjct 4835 AGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTG 4873 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| | ||| | ||| || || |||||| || || ||||| | | || Sbjct 5111 ACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGT 5170 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | |||||| ||||| ||||| | |||||| || ||||| || || || Sbjct 5171 ACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACC 5230 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||||||||| || |||||| |||||| ||||| | | ||| || Sbjct 5231 TTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAG 5290 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||| || || || || ||||| ||||| ||||| Sbjct 5291 GGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTG 5329 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | |||||| || || || || | |||||| ||||| |||||||| |||||||| Sbjct 3809 ATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTT 3868 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||| || |||||| |||||| || || | || | ||| | ||| || Sbjct 3869 GTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGAT 3928 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || | || || ||||| ||||| Sbjct 3929 GGTTTTGCCCGTCAAGGTTTTCACGAAGATTTG 3961 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || |||||||| ||| |||||| | || || || | | ||| Sbjct 3971 ACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGT 4030 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| || |||||||| | |||||||||||| |||||||| || Sbjct 4031 GCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCC 4090 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||| || || ||||| ||||| || || | || | | || ||| Sbjct 4091 TTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAA 4150 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || ||||| || Sbjct 4151 -AGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTG 4189 Score = 95.1 bits (104), Expect = 8e-14 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| || |||||| | ||| ||||||| || || | ||||| | Sbjct 4214 CAAG-TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCA 4272 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 || || ||||| || || | ||||||||||| || ||||| ||||| |||||||| | Sbjct 4273 ACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGA 4332 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAATAGTTTTA 480743 | || |||||| |||||| || |||| | | | | || ||| || || ||||| Sbjct 4333 TTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAA-AGTGATGGTTTTG 4391 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| |||||||| |||||||| || Sbjct 4392 CCGGTAAGAGTCTTCACGAAAATCTG 4417 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||| || ||||| ||||| | |||||||||||| |||||||| ||||| ||| Sbjct 4950 TCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTG 5009 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| || || ||||| |||||| || || | | | || || ||| |||||| Sbjct 5010 TCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAA-GGTAAT 5068 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || | || || ||||||||||| Sbjct 5069 GGTCTTGCCAGTCAAGGTTTTGACGAAAATTTG 5101 >seq3468 Length=50068 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| ||| ||||| | ||| || || || || || | ||||||| Sbjct 38456 TTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGT 38397 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || || ||||||||||||||||| || || || ||| ||| ||||| || Sbjct 38396 TGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTTCGATAGTGTCT 38337 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | |||||||| || || ||||| || | |||||| ||||| || || Sbjct 38336 GAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGAAGATCTG 38281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265578528018092