Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_020850.1 Length=38374 Score E Sequences producing significant alignments: (Bits) Value seq9686 105 2e-18 >seq9686 Length=37809 Score = 105 bits (116), Expect = 2e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 30888 AATATGAAAAAGCTCGTGCTCTACCAGTGAGCAAAATTCAACATTTGAGCAATGATTGCA 30947 ||| ||| ||||||||||||||| ||| | ||| || || | || || || || || Sbjct 5292 AATGTGATAAAGCTCGTGCTCTAACAGGGCGCAGAACTCCAGATCGGAACATTGCGAACA 5233 Query 30948 GTATTCGGCGGATAGGGTAATTATAAACTTCGGAACGTAGCCAAACCATTCAAACACTTG 31007 ||| || || | || || || || |||| ||| || ||| |||||||| ||| ||| Sbjct 5232 GTAATCTGCTGCCAGCGTGATGATGAACTGCGGCACCCTGCCGAACCATTCGTACATTTG 5173 Query 31008 TTGTTCCATTCTGGCTTTTTTCCATCCACCAGCCATAAACGAAACTTGCTCGGCTTGACC 31067 || ||||| | ||||| | ||||||||| ||| | || ||||| || || || || Sbjct 5172 CTGCTCCATGCGCGCTTTCTGCCATCCACCTGCCCGCATCGCAACTTCTTCCGCCTGCCC 5113 Query 31068 TAAAACGACGCGGCCTTGCTTTTCGAATGAGTCGGAAGCCCACATGAA 31115 | |||| || |||| ||| ||||| | || || ||||| | ||| Sbjct 5112 AAGAACGGAACGCCCTTTCTTCTCGAAAGCGTTCGACGCCCAGAGGAA 5065 Score = 102 bits (112), Expect = 2e-17 Identities = 267/400 (67%), Gaps = 17/400 (4%) Strand=Plus/Minus Query 30285 TCAACCTTCTGCTTATTCGTGTAGATATCGCCAACCTCTTTCGCGGCCTGTTCCATTATC 30344 || || ||| ||||||| ||||| ||||| |||||||||||||||||||| || | | Sbjct 5924 TCCACTTTCAGCTTATTGGTGTAAGCGTCGCCCACCTCTTTCGCGGCCTGTTCAATCAGC 5865 Query 30345 TCTTTTGTGAGCGGATAGTTTCTCTTGAGCTCTGCG---TTAGCGGCCATGCGGTCAAGA 30401 | || || | ||| |||| ||| || || || | ||||| |||||||| Sbjct 5864 TGCGCCGTCAGGGAGAAGT---TCTTCAGCCCTTCGGTTTTGGTAGCCATACGGTCAAGC 5808 Query 30402 ACGCGCAAACGATAGGCGCGGTTAGCAATTGGAATATCGTTAATTTCGTTATTGAATCGC 30461 ||||| | ||||||| ||| || || ||||| ||| | ||||| | ||| || Sbjct 5807 ACGCGGAGGCGATAGGATTTGTTGGCGATCGGAATGTCGCTGGTTTCGGTCAGGAAGCGT 5748 Query 30462 TCTCGGCATTCGTAAAATAACTCTTTCCAtttttttGCAAGTTTCTGTTGGGATGCGCCC 30521 ||||| ||| || | ||| |||| || || || || ||| | | | | || Sbjct 5747 TCTCGCGTCGCGTGGAACATCTCGATCCACTTCTTCGCGAGCGTCT-TACCGCT--GGCC 5691 Query 30522 TTTGTCGGATCGTAACTTTCGACCTGCTGGCGAGTAATCGTGATACCAAAC-CTTTCCTT 30580 || |||||||||| |||| ||||||| || || ||| |||| || ||| |||| || Sbjct 5690 TTGGTCGGATCGTGCGATTCGGCCTGCTGCCGGGTGATCTTGATGCCGAACTCTTT--TT 5633 Query 30581 GAACGCATTAACAACCATT---GTTGGAGTGTCGTAACACGCGTTGGCTTGGATAATAAA 30637 | | || | | |||| | | ||| ||||| || ||||| || | || || Sbjct 5632 GGA--CAGTCTCGACCACTTGCGATGGCGTGTCATAGCACGCAAGCAACTGAACGATGAA 5575 Query 30638 GCATTTTTGTTCAGTGGTTAGTGCTGCCATAAATCACCAT 30677 | ||| |||| ||| ||| ||||||||||||||| Sbjct 5574 GGCTTTCACATCAGGTTTTAATGCAGCCATAAATCACCAT 5535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122586877612928