Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_020850.1
Length=38374
Score E
Sequences producing significant alignments: (Bits) Value
seq9686 105 2e-18
>seq9686
Length=37809
Score = 105 bits (116), Expect = 2e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 30888 AATATGAAAAAGCTCGTGCTCTACCAGTGAGCAAAATTCAACATTTGAGCAATGATTGCA 30947
||| ||| ||||||||||||||| ||| | ||| || || | || || || || ||
Sbjct 5292 AATGTGATAAAGCTCGTGCTCTAACAGGGCGCAGAACTCCAGATCGGAACATTGCGAACA 5233
Query 30948 GTATTCGGCGGATAGGGTAATTATAAACTTCGGAACGTAGCCAAACCATTCAAACACTTG 31007
||| || || | || || || || |||| ||| || ||| |||||||| ||| |||
Sbjct 5232 GTAATCTGCTGCCAGCGTGATGATGAACTGCGGCACCCTGCCGAACCATTCGTACATTTG 5173
Query 31008 TTGTTCCATTCTGGCTTTTTTCCATCCACCAGCCATAAACGAAACTTGCTCGGCTTGACC 31067
|| ||||| | ||||| | ||||||||| ||| | || ||||| || || || ||
Sbjct 5172 CTGCTCCATGCGCGCTTTCTGCCATCCACCTGCCCGCATCGCAACTTCTTCCGCCTGCCC 5113
Query 31068 TAAAACGACGCGGCCTTGCTTTTCGAATGAGTCGGAAGCCCACATGAA 31115
| |||| || |||| ||| ||||| | || || ||||| | |||
Sbjct 5112 AAGAACGGAACGCCCTTTCTTCTCGAAAGCGTTCGACGCCCAGAGGAA 5065
Score = 102 bits (112), Expect = 2e-17
Identities = 267/400 (67%), Gaps = 17/400 (4%)
Strand=Plus/Minus
Query 30285 TCAACCTTCTGCTTATTCGTGTAGATATCGCCAACCTCTTTCGCGGCCTGTTCCATTATC 30344
|| || ||| ||||||| ||||| ||||| |||||||||||||||||||| || | |
Sbjct 5924 TCCACTTTCAGCTTATTGGTGTAAGCGTCGCCCACCTCTTTCGCGGCCTGTTCAATCAGC 5865
Query 30345 TCTTTTGTGAGCGGATAGTTTCTCTTGAGCTCTGCG---TTAGCGGCCATGCGGTCAAGA 30401
| || || | ||| |||| ||| || || || | ||||| ||||||||
Sbjct 5864 TGCGCCGTCAGGGAGAAGT---TCTTCAGCCCTTCGGTTTTGGTAGCCATACGGTCAAGC 5808
Query 30402 ACGCGCAAACGATAGGCGCGGTTAGCAATTGGAATATCGTTAATTTCGTTATTGAATCGC 30461
||||| | ||||||| ||| || || ||||| ||| | ||||| | ||| ||
Sbjct 5807 ACGCGGAGGCGATAGGATTTGTTGGCGATCGGAATGTCGCTGGTTTCGGTCAGGAAGCGT 5748
Query 30462 TCTCGGCATTCGTAAAATAACTCTTTCCAtttttttGCAAGTTTCTGTTGGGATGCGCCC 30521
||||| ||| || | ||| |||| || || || || ||| | | | | ||
Sbjct 5747 TCTCGCGTCGCGTGGAACATCTCGATCCACTTCTTCGCGAGCGTCT-TACCGCT--GGCC 5691
Query 30522 TTTGTCGGATCGTAACTTTCGACCTGCTGGCGAGTAATCGTGATACCAAAC-CTTTCCTT 30580
|| |||||||||| |||| ||||||| || || ||| |||| || ||| |||| ||
Sbjct 5690 TTGGTCGGATCGTGCGATTCGGCCTGCTGCCGGGTGATCTTGATGCCGAACTCTTT--TT 5633
Query 30581 GAACGCATTAACAACCATT---GTTGGAGTGTCGTAACACGCGTTGGCTTGGATAATAAA 30637
| | || | | |||| | | ||| ||||| || ||||| || | || ||
Sbjct 5632 GGA--CAGTCTCGACCACTTGCGATGGCGTGTCATAGCACGCAAGCAACTGAACGATGAA 5575
Query 30638 GCATTTTTGTTCAGTGGTTAGTGCTGCCATAAATCACCAT 30677
| ||| |||| ||| ||| |||||||||||||||
Sbjct 5574 GGCTTTCACATCAGGTTTTAATGCAGCCATAAATCACCAT 5535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122586877612928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |