Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 141 2e-28
>seq6222
Length=12937
Score = 141 bits (156), Expect = 2e-28
Identities = 173/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| ||||| || | | || || |||| ||| | ||||| || || ||| ||
Sbjct 4641 ATTTGCATACCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTG 4700
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| || | || | | || || |||||||| ||||| |||||||| | ||||||
Sbjct 4701 TAGTCAGACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGA 4760
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|||||||| || |||||||||||||| ||||||| ||| | || |||||| ||||||
Sbjct 4761 TCAGGAGGAATGCCTTCTTTATCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAA 4820
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| || ||||| | ||| || || || || || || ||||| || || ||||||||
Sbjct 4821 GGTTCGACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876
Score = 123 bits (136), Expect = 4e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | || || || || ||||| | |||| ||||| || ||
Sbjct 3957 ATTTGCATACCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTG 4016
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| || || | | ||| ||||| || || ||||||||||| || | ||||||
Sbjct 4017 TAGTCGGACAAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGA 4076
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || ||||| || ||||| ||||| | || | || ||| || || ||
Sbjct 4077 TCGGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGAT 4136
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| || ||||| | ||| || || || || || || ||||||||||| || |||||
Sbjct 4137 GGTTCGACTTCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192
Score = 116 bits (128), Expect = 7e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
|||||||||||||| || || | | ||| || ||||| || ||||| || || || |
Sbjct 3783 ATATTATAGTCGGACAAGGTACGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGT 3842
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|| ||||| ||||| || ||||| || ||||| ||||||| ||| | ||| ||| ||
Sbjct 3843 TGCTGATCGGGAGGAATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTG 3902
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
||||| | |||||||| | || || ||||| || || | ||||| || || ||||||
Sbjct 3903 TCGGACGGTTCAACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGC 3962
Query 193359 AT 193360
||
Sbjct 3963 AT 3964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898972585667280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |