Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 122 2e-22
seq5580 111 3e-19
seq3468 91.5 3e-13
>seq6222
Length=12937
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| |||| | ||||| || || || | || | ||||| |||||| ||||||
Sbjct 4191 ATACCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCA 4250
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| || || | || ||||| ||||| ||||| |||||||||| |||||||| ||
Sbjct 4251 GATAAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGG 4310
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| ||||| ||| || || || | || || | ||
Sbjct 4311 GGAATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCG 4370
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | ||| |||||||| || || | || || | || ||||||||
Sbjct 4371 ACTTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420
Score = 104 bits (114), Expect = 5e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
||||| || | ||||| | || ||||| | |||| || ||| || || || || ||
Sbjct 4647 ATACCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGA-ATGTTGTAGTC 4705
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||| | || || | || ||||||||||| || || || ||||| | |||||||||||
Sbjct 4706 AGACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGG 4765
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || |||||||||||||| ||||| ||| || || |||| || || | |||
Sbjct 4766 AGGAATGCCTTCTTTATCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTC 4825
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | ||| || || || || || | ||||| | || || |||||
Sbjct 4826 GACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| |||| | ||| | || || || | || | ||||| ||| || || |||
Sbjct 4875 ATACCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCA 4934
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || || | || ||||||||||| ||||| || || || | |||||||| ||
Sbjct 4935 GACAAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGA 4994
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| |||||| || || || || | || |||| ||
Sbjct 4995 GGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCA 5054
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | |||||||| || ||||| || ||||| | || || |||||
Sbjct 5055 ACTTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104
>seq5580
Length=7482
Score = 111 bits (122), Expect = 3e-19
Identities = 311/481 (65%), Gaps = 8/481 (2%)
Strand=Plus/Plus
Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883
|| |||||||| ||| ||||||||||| | || || | || || |||||| |
Sbjct 5623 CAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGA 5682
Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943
|| ||||| || |||||||| || ||||| || || || |||||| | ||| || ||
Sbjct 5683 CCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAA 5742
Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTC--CAAACATTAATTTATCATCTA 50001
||||||||||| ||||| || || | || |||| |||| | | | | ||
Sbjct 5743 ATACCCTCGACGGCTGCAAAGGCGATGA--CTCGCTCAGCAAAACCTGCTGTGTTGTCAG 5800
Query 50002 ATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061
| ||||| || | |||||||| || || || || | | |||| | |||| ||||||
Sbjct 5801 AGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTC 5860
Query 50062 TAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACA 50121
|| | | ||| |||| ||||| | |||||||
Sbjct 5861 GGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACA 5920
Query 50122 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAAT 50181
|||| ||||| | |||||| || || || || || || | ||||| | |
Sbjct 5921 TTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAA 5980
Query 50182 ACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239
||| ||||| || | ||||| || || || || ||| ||||| |||||||| ||
Sbjct 5981 CCTGCACTTCTTGGGCA--AATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGC 6038
Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 50299
|| ||||| || ||||||| | | || || ||||||| | |||||| ||||||||
Sbjct 6039 GGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTCCCA 6098
Query 50300 A 50300
|
Sbjct 6099 A 6099
>seq3468
Length=50068
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || || ||||| | || | | || ||||||||||| || || ||||| || |
Sbjct 38460 GATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGATCAAACG 38401
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
|||||||| || || |||||||| || ||||| ||||| || ||||| ||||
Sbjct 38400 TTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTTCGATAGT 38341
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||||| | || || || || || ||||| ||||| || || || || | || |||||
Sbjct 38340 GTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGAAGATCTG 38281
Query 192534 CAT 192536
|||
Sbjct 38280 CAT 38278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983715247014150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |