Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6222 122 2e-22 seq5580 111 3e-19 seq3468 91.5 3e-13 >seq6222 Length=12937 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| | ||||| || || || | || | ||||| |||||| |||||| Sbjct 4191 ATACCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCA 4250 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || | || ||||| ||||| ||||| |||||||||| |||||||| || Sbjct 4251 GATAAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGG 4310 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| ||| || || || | || || | || Sbjct 4311 GGAATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCG 4370 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| |||||||| || || | || || | || |||||||| Sbjct 4371 ACTTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | ||||| | || ||||| | |||| || ||| || || || || || Sbjct 4647 ATACCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGA-ATGTTGTAGTC 4705 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | || || | || ||||||||||| || || || ||||| | ||||||||||| Sbjct 4706 AGACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGG 4765 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||||||||| ||||| ||| || || |||| || || | ||| Sbjct 4766 AGGAATGCCTTCTTTATCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTC 4825 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || | ||||| | || || ||||| Sbjct 4826 GACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| | ||| | || || || | || | ||||| ||| || || ||| Sbjct 4875 ATACCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCA 4934 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || | || ||||||||||| ||||| || || || | |||||||| || Sbjct 4935 GACAAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGA 4994 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| || || || || | || |||| || Sbjct 4995 GGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCA 5054 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||| || ||||| || ||||| | || || ||||| Sbjct 5055 ACTTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104 >seq5580 Length=7482 Score = 111 bits (122), Expect = 3e-19 Identities = 311/481 (65%), Gaps = 8/481 (2%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || |||||||| ||| ||||||||||| | || || | || || |||||| | Sbjct 5623 CAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGA 5682 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||| || |||||||| || ||||| || || || |||||| | ||| || || Sbjct 5683 CCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAA 5742 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTC--CAAACATTAATTTATCATCTA 50001 ||||||||||| ||||| || || | || |||| |||| | | | | || Sbjct 5743 ATACCCTCGACGGCTGCAAAGGCGATGA--CTCGCTCAGCAAAACCTGCTGTGTTGTCAG 5800 Query 50002 ATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 | ||||| || | |||||||| || || || || | | |||| | |||| |||||| Sbjct 5801 AGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTC 5860 Query 50062 TAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACA 50121 || | | ||| |||| ||||| | ||||||| Sbjct 5861 GGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACA 5920 Query 50122 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAAT 50181 |||| ||||| | |||||| || || || || || || | ||||| | | Sbjct 5921 TTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAA 5980 Query 50182 ACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239 ||| ||||| || | ||||| || || || || ||| ||||| |||||||| || Sbjct 5981 CCTGCACTTCTTGGGCA--AATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGC 6038 Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 50299 || ||||| || ||||||| | | || || ||||||| | |||||| |||||||| Sbjct 6039 GGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTCCCA 6098 Query 50300 A 50300 | Sbjct 6099 A 6099 >seq3468 Length=50068 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| | || | | || ||||||||||| || || ||||| || | Sbjct 38460 GATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGATCAAACG 38401 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||| || || |||||||| || ||||| ||||| || ||||| |||| Sbjct 38400 TTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTTCGATAGT 38341 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| | || || || || || ||||| ||||| || || || || | || ||||| Sbjct 38340 GTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGAAGATCTG 38281 Query 192534 CAT 192536 ||| Sbjct 38280 CAT 38278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983715247014150