Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6222 104 4e-17 seq3468 95.1 2e-14 >seq6222 Length=12937 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | || ||||| | |||| || || ||| || || || Sbjct 4647 ATACCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCA 4706 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| ||||||||||| || || |||||||| | ||||| ||||| Sbjct 4707 GACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGA 4766 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| || || ||||| || || | ||| Sbjct 4767 GGAATGCCTTCTTTATCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCG 4826 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || || || | ||||| | ||| || ||||| Sbjct 4827 ACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||||||||| ||||| ||||| || | ||||| || || || || ||||||| Sbjct 4948 CGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTT 5007 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| |||||| || || || || || || |||| || ||||| | |||| Sbjct 5008 TGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAA 5067 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || ||||| || ||||| | ||| || ||||| Sbjct 5068 TGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| || || | || |||| |||| ||| || || || || || | | Sbjct 4467 ATATTGTAATCAGACAAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGT 4526 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||||||||| || || |||||||| ||||| || || ||| || || || || Sbjct 4527 TGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTG 4586 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || |||| || ||||| | ||| |||||||| || || || || || | ||| || ||| Sbjct 4587 TCAGACGGCTCAACTTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGC 4646 Query 172068 AT 172069 || Sbjct 4647 AT 4648 >seq3468 Length=50068 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||||||||| || || || || || | ||||| || || || |||||||| | Sbjct 38434 CGTCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCGGGGGGGATTCCTTCCT 38375 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| ||||| || ||||| ||||| ||||| | || || || || || | Sbjct 38374 TGTCTTGGATTTTGGCCTTAACATTTTCGATAGTGTCTGAAGGCTCGACCTCAAGGGTGA 38315 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| || || || || | ||| |||||||| Sbjct 38314 TGGTCTTACCCGTCAAAGTCTTGACGAAGATCTGCAT 38278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904450031368200