Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5580 113 1e-19 seq7813 109 2e-18 seq985 91.5 4e-13 >seq5580 Length=7482 Score = 113 bits (124), Expect = 1e-19 Identities = 274/414 (66%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 133227 TTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTA 133286 |||| || || ||||| || |||||| ||||| |||||| || | || ||| Sbjct 6055 TTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAATGAAAACTTGGTGGAGCGATTTG 5996 Query 133287 TGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAA 133346 |||||| || | ||||||| || || || || | |||||||| ||||||| Sbjct 5995 CCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTTCCAGATTGCCATGGAAA 5936 Query 133347 ATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGA 133406 | || ||||| | ||||| | |||| || ||||| ||| | | | | ||| Sbjct 5935 ACATTCATTCCGAAATGTATTCACTTTTAATCGACACTTATATCCGATCTCCTGATGAGA 5876 Query 133407 AGCACAAACTATTCAACGCCATTAGCGAAT---TTCCTTGTATTAAAAAGAAATCTGACT 133463 | || | || ||| || || |||| |||||||| | || ||||| | || | Sbjct 5875 AACAGATGCTGTTCCGAGCTAT---CGAAACCCTTCCTTGTGTAAAGAAGAAGGCCGATT 5819 Query 133464 GGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTG 133523 |||| ||||||||||| ||||| || |||||||| || || | || |||| Sbjct 5818 GGGCCTTTAAATGGATCTCTGACAACACAGCAGGTTTTGCTGAGCGAGTCATCGCCTTTG 5759 Query 133524 CTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGC 133583 | | || ||||| ||||||||| ||| | || ||| ||||| ||||| || ||| Sbjct 5758 CAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGCTGAAGAAGA 5699 Query 133584 GTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 | ||| | | || || || |||||| ||||| || ||||| | ||||||| Sbjct 5698 GAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAGG 5645 >seq7813 Length=5936 Score = 109 bits (120), Expect = 2e-18 Identities = 200/290 (69%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATT---TGTAACCAATACCTTGGTTAC 155530 ||||||||| || | ||||| || || || ||||| ||| || | | ||||| || Sbjct 1758 TGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGACT---TTGGTGAC 1814 Query 155531 GTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAAT 155590 ||| | || ||| ||||| | || ||||| || || || |||||| ||| |||| Sbjct 1815 TTCTTTGAGCTTGACAAAGTCATACGTCTTATCTTCTTTCACGAACATATTCAGAGCAAT 1874 Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTCACAG 155648 || |||| ||| || || || | || | || | | ||||| ||||| || Sbjct 1875 GGATGCCAAATTGCAGACAGCTATTTCGTC--CGGAGAGGAATATTCGACAATTTCCGTA 1932 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 ||||| || || | |||||||| || | || | ||| |||||||| | |||||| ||| Sbjct 1933 CACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTACAGGCA 1992 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||||| || ||||| || || || || |||| || | ||| | ||| Sbjct 1993 TCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAAT 2042 >seq985 Length=45870 Score = 91.5 bits (100), Expect = 4e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 60133 GGATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGT 60192 ||| |||| || |||||||| | | ||||| ||||| ||||||||| ||||| || Sbjct 12741 GGACAATTTGGTAAAAATATAACGCGGCGATGCAGCGTCTTTGCCACCCTGCAGACGAGT 12682 Query 60193 TCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGC 60252 ||||| || || ||||| | | | || || ||||| ||||| || || || || || Sbjct 12681 GCCAAACTGACCAATTGGCAGCAGCAAGTTGATATTGTTCGAGCCCACAAAGTTCTGCGC 12622 Query 60253 GAGACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGA 60312 | || ||| | || | || |||||||||||||||||| | |||||||| | Sbjct 12621 CAAGTTAATAATGGTCCCCATCAAGGAGGCTTCACCGTGATGATAAGCTGAATGTTCAGC 12562 Query 60313 AACATATCCACTGAATTGTGCGACTTTAATTTC 60345 || | ||| || || || | ||||||||| Sbjct 12561 TACCGAACCAGCCAACTGGGCAATTTTAATTTC 12529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470674278749973