Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 113 1e-19
seq7813 109 2e-18
seq985 91.5 4e-13
>seq5580
Length=7482
Score = 113 bits (124), Expect = 1e-19
Identities = 274/414 (66%), Gaps = 6/414 (1%)
Strand=Plus/Minus
Query 133227 TTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTA 133286
|||| || || ||||| || |||||| ||||| |||||| || | || |||
Sbjct 6055 TTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAATGAAAACTTGGTGGAGCGATTTG 5996
Query 133287 TGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAA 133346
|||||| || | ||||||| || || || || | |||||||| |||||||
Sbjct 5995 CCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTTCCAGATTGCCATGGAAA 5936
Query 133347 ATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGA 133406
| || ||||| | ||||| | |||| || ||||| ||| | | | | |||
Sbjct 5935 ACATTCATTCCGAAATGTATTCACTTTTAATCGACACTTATATCCGATCTCCTGATGAGA 5876
Query 133407 AGCACAAACTATTCAACGCCATTAGCGAAT---TTCCTTGTATTAAAAAGAAATCTGACT 133463
| || | || ||| || || |||| |||||||| | || ||||| | || |
Sbjct 5875 AACAGATGCTGTTCCGAGCTAT---CGAAACCCTTCCTTGTGTAAAGAAGAAGGCCGATT 5819
Query 133464 GGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTG 133523
|||| ||||||||||| ||||| || |||||||| || || | || ||||
Sbjct 5818 GGGCCTTTAAATGGATCTCTGACAACACAGCAGGTTTTGCTGAGCGAGTCATCGCCTTTG 5759
Query 133524 CTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGC 133583
| | || ||||| ||||||||| ||| | || ||| ||||| ||||| || |||
Sbjct 5758 CAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGCTGAAGAAGA 5699
Query 133584 GTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637
| ||| | | || || || |||||| ||||| || ||||| | |||||||
Sbjct 5698 GAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAGG 5645
>seq7813
Length=5936
Score = 109 bits (120), Expect = 2e-18
Identities = 200/290 (69%), Gaps = 10/290 (3%)
Strand=Plus/Plus
Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATT---TGTAACCAATACCTTGGTTAC 155530
||||||||| || | ||||| || || || ||||| ||| || | | ||||| ||
Sbjct 1758 TGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGACT---TTGGTGAC 1814
Query 155531 GTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAAT 155590
||| | || ||| ||||| | || ||||| || || || |||||| ||| ||||
Sbjct 1815 TTCTTTGAGCTTGACAAAGTCATACGTCTTATCTTCTTTCACGAACATATTCAGAGCAAT 1874
Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTCACAG 155648
|| |||| ||| || || || | || | || | | ||||| ||||| ||
Sbjct 1875 GGATGCCAAATTGCAGACAGCTATTTCGTC--CGGAGAGGAATATTCGACAATTTCCGTA 1932
Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708
||||| || || | |||||||| || | || | ||| |||||||| | |||||| |||
Sbjct 1933 CACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTACAGGCA 1992
Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758
|||||||| || ||||| || || || || |||| || | ||| | |||
Sbjct 1993 TCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAAT 2042
>seq985
Length=45870
Score = 91.5 bits (100), Expect = 4e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 60133 GGATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGT 60192
||| |||| || |||||||| | | ||||| ||||| ||||||||| ||||| ||
Sbjct 12741 GGACAATTTGGTAAAAATATAACGCGGCGATGCAGCGTCTTTGCCACCCTGCAGACGAGT 12682
Query 60193 TCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGC 60252
||||| || || ||||| | | | || || ||||| ||||| || || || || ||
Sbjct 12681 GCCAAACTGACCAATTGGCAGCAGCAAGTTGATATTGTTCGAGCCCACAAAGTTCTGCGC 12622
Query 60253 GAGACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGA 60312
| || ||| | || | || |||||||||||||||||| | |||||||| |
Sbjct 12621 CAAGTTAATAATGGTCCCCATCAAGGAGGCTTCACCGTGATGATAAGCTGAATGTTCAGC 12562
Query 60313 AACATATCCACTGAATTGTGCGACTTTAATTTC 60345
|| | ||| || || || | |||||||||
Sbjct 12561 TACCGAACCAGCCAACTGGGCAATTTTAATTTC 12529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470674278749973
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |