Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_021857.1
Length=41475
Score E
Sequences producing significant alignments: (Bits) Value
seq44067 1696 0.0
seq9686 165 2e-36
>seq44067
Length=1252
Score = 1696 bits (1880), Expect = 0.0
Identities = 1127/1250 (90%), Gaps = 1/1250 (0%)
Strand=Plus/Plus
Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1 TGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCTGAT 60
Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCACG 39220
|||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 61 TCGTTTGGTGGTAATCCACCGTTATATTCGTGCGGCCTGAGTGCGCTGTAATATCCAACG 120
Query 39221 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 39280
|| ||||||||||||||||||| || |||||||||||||||||||| ||| || | |
Sbjct 121 ATGTAGTCCGTTATGGCGTGAGTCGCATCGCTGAAGCTTACGTAACCTGTCACTGGTACC 180
Query 39281 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 39340
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CATTCGTTCTTCAGACTCCGGAAGAAGCGTTCCATTGGGCTATTATCCCAGCAGTTTCCA 240
Query 39341 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCTGCT 39400
||||| |||||||||||| ||||| |||||||||||| ||||||| |||||||||||||
Sbjct 241 CGCCGACTCATACTCTGTTTGATCCGGTATCGCCACAGCAACTGCC-GGAACTGCCTGCT 299
Query 39401 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGTTTC 39460
||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||
Sbjct 300 CGTATAATGACTGCCCTGATCACTGTGGAACATCACTCCGACGGGCTTACCACGCGTTTC 359
Query 39461 CCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGGCCCA 39520
|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 360 CCATGCCATTTCCAGCGCCTTCATGGTGAGTCTGCTGTCCGGTGAGAACGACATTGCCCA 419
Query 39521 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACC 39580
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCCAGGTACGCCCAGCGCTTACC 479
Query 39581 CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTG 39640
||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct 480 CGTCCAGATATAGGTCACATCGCCGCACCACACCTGGTTTGGCTCTCTTACGGCGAACTG 539
Query 39641 CCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTGAGT 39700
|| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 CCGCTCAAGGTGATTAGGGATAGCAACATGTTCATGACCACCACGCTTATACCGGTGAGT 599
Query 39701 CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCC 39760
|| ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct 600 TGGTTGCTGGCAACTGACCAGCCCAAGCTCTTTCATTAGCCTGCCAGCGAGCCAGCGCCC 659
Query 39761 CATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTG 39820
|||||| | ||||||| | ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 660 CATCTGATGGCCTCTCTGAGTTGCCATTGTCGCGATGCTCCTTGCTCCGGCCGAACCGTG 719
Query 39821 GCTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGTTT 39880
||||||| || |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 720 GCTGATGTTGTGCAGCTCAAGTACCTGGCTTCGTAATACAGCCCGTCTGCCGTCTGGCTT 779
Query 39881 TTCAGGACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAG 39940
||||||||| |||||||||||| |||| || |||||||||||||||||||| ||||||||
Sbjct 780 TTCAGGACGATTTTTCCAGTATTTGTAACTACTGCGATGAACCCCGAACACGTGGCAGAG 839
Query 39941 TGTGACCATAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 40000
||| ||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 840 AGTGGCCACAGGATAACGCGCCCTGAGCTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 899
Query 40001 GACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGC 40060
||||||||||||||||||||||||||||| || || || ||||||||||| ||||| |||
Sbjct 900 GACATCAAGAGCGCGGTAGCCTTTTTTAAAATATCGTTTTCCATTTCAATACGTTGCAGC 959
Query 40061 TTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTT 40120
||||| || ||||| || ||||| ||||| |||||||| || || || | |||||| |||
Sbjct 960 TTTTTTCTCAGCTCGCGTATTTCGATTTGCTCCGGGGTTATCGGAGAAGATTTTGGCGTT 1019
Query 40121 TTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACA 40180
|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 1020 TTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATTTTGTCATCGTAGAAAGGCCAACA 1079
Query 40181 TCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGAT 40240
||||| || || || || | ||| || ||||| | ||||| |||||||| |||||||||
Sbjct 1080 TCCATGGCCTTCGCTGCTTGTGCAACTGTGTAAGTTTGGTCGACAACCAGCTGAGCGGAT 1139
Query 40241 TCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCTGA 40300
|||||||| || || | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1140 TCGCGTTTGAATTCAGGACTAAAATTTCTTCGTTTCATTGGAGCACCTGTGTTGTTCTGA 1199
Query 40301 GGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 40350
| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 GATGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCA 1249
>seq9686
Length=37809
Score = 165 bits (182), Expect = 2e-36
Identities = 211/287 (74%), Gaps = 8/287 (3%)
Strand=Plus/Plus
Query 38451 ATCGTCAATAC-AGTACTGGAGGCTAACCAGCATGCAAAACAGCAGATCGCACTGGAGTC 38509
||| |||| || | ||||| |||| || |||||||| |||||||||||||||||||||||
Sbjct 4481 ATCATCAACACCATTACTG-AGGCAAATCAGCATGCCAAACAGCAGATCGCACTGGAGTC 4539
Query 38510 ACAGAGAACCCAGGCT---GATATCAAAATGGCTTTTGCGAATGATGATTGCGCTGCCCG 38566
||||| || ||| || |||||| ||||| ||||||||||||||||| || |
Sbjct 4540 ACAGAATGCC---GCTAACGACATCAAAGTGGCTGTTGCGAATGATGATTGCTCTCGTCA 4596
Query 38567 TCCTGTTCCTGCTCGTGCAGCTGAACGGCTGCGCCGGTACGCGGACAGTTTACGTACCAG 38626
| ||| |||| | || ||| | |||||||| | |||||| |||||||||||| ||||
Sbjct 4597 GCTTGTGCCTGTTGCAGCTGCTAACCGGCTGCGGCAGTACGCAGACAGTTTACGTGCCAG 4656
Query 38627 TTTCGGCGGTACCACTACTAGCGAATCTGACCGCTGAAACTCCGCAACCAGCTATCCCCG 38686
| | ||| || | | | || ||||| ||||||| || || ||| | || |||
Sbjct 4657 CACCAGTGGTTCCGATTCCGTCAAACCTGACTTCTGAAACGCCCCAGCCAACGATTTCCG 4716
Query 38687 ACCCGCTGACATGGAGTGGGAGCCTGGATTTGAACGTAAGCCTGTTG 38733
| |||||| | | | || || |||||| |||| || | | |||||
Sbjct 4717 ATCCGCTGTCTTATGGGGGCAGTCTGGATCTGAATGTGAACTTGTTG 4763
Score = 80.6 bits (88), Expect = 7e-11
Identities = 88/117 (75%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 17211 AATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGT 17270
|||||||| | || |||||| | || | || || || ||||||||| ||||||||||
Sbjct 25133 AATCCGTTCGCAGACATCAAAGCCGACGCTACCGTAAACACGGCTCTCTCAAACCTTGGT 25192
Query 17271 TTGGGAGAAGCAGCTAAAAGGAATGTAGGTACAGGGGCGAATCAGATACCTGATATG 17327
||| ||| || || ||||| |||| ||||| ||||| || || || || || |||
Sbjct 25193 TTGAAAGAGGCGGCAAAAAGAGATGTTGGTACCGGGGCAAACCAAATTCCGGACATG 25249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132502933212826
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |