Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq44067 1696 0.0 seq9686 165 2e-36 >seq44067 Length=1252 Score = 1696 bits (1880), Expect = 0.0 Identities = 1127/1250 (90%), Gaps = 1/1250 (0%) Strand=Plus/Plus Query 39101 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 39160 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1 TGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGATTTTCTGAT 60 Query 39161 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCCACG 39220 |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||| ||| Sbjct 61 TCGTTTGGTGGTAATCCACCGTTATATTCGTGCGGCCTGAGTGCGCTGTAATATCCAACG 120 Query 39221 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 39280 || ||||||||||||||||||| || |||||||||||||||||||| ||| || | | Sbjct 121 ATGTAGTCCGTTATGGCGTGAGTCGCATCGCTGAAGCTTACGTAACCTGTCACTGGTACC 180 Query 39281 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 39340 ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 181 CATTCGTTCTTCAGACTCCGGAAGAAGCGTTCCATTGGGCTATTATCCCAGCAGTTTCCA 240 Query 39341 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCTGCT 39400 ||||| |||||||||||| ||||| |||||||||||| ||||||| ||||||||||||| Sbjct 241 CGCCGACTCATACTCTGTTTGATCCGGTATCGCCACAGCAACTGCC-GGAACTGCCTGCT 299 Query 39401 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGTTTC 39460 ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||| Sbjct 300 CGTATAATGACTGCCCTGATCACTGTGGAACATCACTCCGACGGGCTTACCACGCGTTTC 359 Query 39461 CCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGGCCCA 39520 |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 360 CCATGCCATTTCCAGCGCCTTCATGGTGAGTCTGCTGTCCGGTGAGAACGACATTGCCCA 419 Query 39521 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACC 39580 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 420 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCCAGGTACGCCCAGCGCTTACC 479 Query 39581 CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTG 39640 ||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||| Sbjct 480 CGTCCAGATATAGGTCACATCGCCGCACCACACCTGGTTTGGCTCTCTTACGGCGAACTG 539 Query 39641 CCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTGAGT 39700 || ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 CCGCTCAAGGTGATTAGGGATAGCAACATGTTCATGACCACCACGCTTATACCGGTGAGT 599 Query 39701 CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCC 39760 || ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||| || Sbjct 600 TGGTTGCTGGCAACTGACCAGCCCAAGCTCTTTCATTAGCCTGCCAGCGAGCCAGCGCCC 659 Query 39761 CATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTG 39820 |||||| | ||||||| | ||||||||||| |||||||| |||||||||||||||||||| Sbjct 660 CATCTGATGGCCTCTCTGAGTTGCCATTGTCGCGATGCTCCTTGCTCCGGCCGAACCGTG 719 Query 39821 GCTGATGCCATGTAGCTCAAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGTTT 39880 ||||||| || |||||||||||||| || |||||||||||||||||||||||||| || Sbjct 720 GCTGATGTTGTGCAGCTCAAGTACCTGGCTTCGTAATACAGCCCGTCTGCCGTCTGGCTT 779 Query 39881 TTCAGGACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAG 39940 ||||||||| |||||||||||| |||| || |||||||||||||||||||| |||||||| Sbjct 780 TTCAGGACGATTTTTCCAGTATTTGTAACTACTGCGATGAACCCCGAACACGTGGCAGAG 839 Query 39941 TGTGACCATAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 40000 ||| ||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct 840 AGTGGCCACAGGATAACGCGCCCTGAGCTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 899 Query 40001 GACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGC 40060 ||||||||||||||||||||||||||||| || || || ||||||||||| ||||| ||| Sbjct 900 GACATCAAGAGCGCGGTAGCCTTTTTTAAAATATCGTTTTCCATTTCAATACGTTGCAGC 959 Query 40061 TTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTT 40120 ||||| || ||||| || ||||| ||||| |||||||| || || || | |||||| ||| Sbjct 960 TTTTTTCTCAGCTCGCGTATTTCGATTTGCTCCGGGGTTATCGGAGAAGATTTTGGCGTT 1019 Query 40121 TTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACA 40180 |||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| Sbjct 1020 TTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATTTTGTCATCGTAGAAAGGCCAACA 1079 Query 40181 TCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGAT 40240 ||||| || || || || | ||| || ||||| | ||||| |||||||| ||||||||| Sbjct 1080 TCCATGGCCTTCGCTGCTTGTGCAACTGTGTAAGTTTGGTCGACAACCAGCTGAGCGGAT 1139 Query 40241 TCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCTGA 40300 |||||||| || || | |||||||||||| |||||||||||||||||||||||||||| Sbjct 1140 TCGCGTTTGAATTCAGGACTAAAATTTCTTCGTTTCATTGGAGCACCTGTGTTGTTCTGA 1199 Query 40301 GGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 40350 | ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1200 GATGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCA 1249 >seq9686 Length=37809 Score = 165 bits (182), Expect = 2e-36 Identities = 211/287 (74%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 38451 ATCGTCAATAC-AGTACTGGAGGCTAACCAGCATGCAAAACAGCAGATCGCACTGGAGTC 38509 ||| |||| || | ||||| |||| || |||||||| ||||||||||||||||||||||| Sbjct 4481 ATCATCAACACCATTACTG-AGGCAAATCAGCATGCCAAACAGCAGATCGCACTGGAGTC 4539 Query 38510 ACAGAGAACCCAGGCT---GATATCAAAATGGCTTTTGCGAATGATGATTGCGCTGCCCG 38566 ||||| || ||| || |||||| ||||| ||||||||||||||||| || | Sbjct 4540 ACAGAATGCC---GCTAACGACATCAAAGTGGCTGTTGCGAATGATGATTGCTCTCGTCA 4596 Query 38567 TCCTGTTCCTGCTCGTGCAGCTGAACGGCTGCGCCGGTACGCGGACAGTTTACGTACCAG 38626 | ||| |||| | || ||| | |||||||| | |||||| |||||||||||| |||| Sbjct 4597 GCTTGTGCCTGTTGCAGCTGCTAACCGGCTGCGGCAGTACGCAGACAGTTTACGTGCCAG 4656 Query 38627 TTTCGGCGGTACCACTACTAGCGAATCTGACCGCTGAAACTCCGCAACCAGCTATCCCCG 38686 | | ||| || | | | || ||||| ||||||| || || ||| | || ||| Sbjct 4657 CACCAGTGGTTCCGATTCCGTCAAACCTGACTTCTGAAACGCCCCAGCCAACGATTTCCG 4716 Query 38687 ACCCGCTGACATGGAGTGGGAGCCTGGATTTGAACGTAAGCCTGTTG 38733 | |||||| | | | || || |||||| |||| || | | ||||| Sbjct 4717 ATCCGCTGTCTTATGGGGGCAGTCTGGATCTGAATGTGAACTTGTTG 4763 Score = 80.6 bits (88), Expect = 7e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 17211 AATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGT 17270 |||||||| | || |||||| | || | || || || ||||||||| |||||||||| Sbjct 25133 AATCCGTTCGCAGACATCAAAGCCGACGCTACCGTAAACACGGCTCTCTCAAACCTTGGT 25192 Query 17271 TTGGGAGAAGCAGCTAAAAGGAATGTAGGTACAGGGGCGAATCAGATACCTGATATG 17327 ||| ||| || || ||||| |||| ||||| ||||| || || || || || ||| Sbjct 25193 TTGAAAGAGGCGGCAAAAAGAGATGTTGGTACCGGGGCAAACCAAATTCCGGACATG 25249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132502933212826