Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq46955 123 3e-22 seq7268 100 3e-15 seq5580 95.1 1e-13 seq7813 87.8 2e-11 >seq46955 Length=3063 Score = 123 bits (136), Expect = 3e-22 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| || ||| || || || |||||||| || || || || Sbjct 2132 GCTTGGCCAACTCGCCGGGCAAGAGCAGACGAACAGCCGTCTGGATTTCCCGACTGGTGA 2073 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| |||| ||| || || | | ||||||| || | | Sbjct 2072 TGGTCGAGCGCTTGTTGTAGTGGGCCAAACGCGACGCTTCCGCGGCGATGCGCTCAAAGA 2013 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||| | ||| | |||| |||| | ||| |||||||| Sbjct 2012 TGTCGTTGACAAAGCTGTTCATAATGCTCATGGCCTTGCTGGAAACGCCAGTGTCGGGGT 1953 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||||||||||||||| ||| Sbjct 1952 GGACTTGCTTGAGCACCTTGTAAATG 1927 >seq7268 Length=13466 Score = 100 bits (110), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| ||| || ||| || ||| || || |||||||| || || || || || | Sbjct 10282 TGGCCAATTCACCAGGCAAGAGCAGACGAACAGCGGTCTGAATTTCTCGACTGGTTATGG 10341 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||| || |||| |||||||| || |||| | | ||||| |||| |||| Sbjct 10342 TGGAACGCTTATTGTAGTGGGCCAGACGAGAAGCTTCGGCGGCAATGCGCTCGAAAATGT 10401 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||||||| |||||||| ||| | ||| |||| | || |||||| || | Sbjct 10402 CGTTGACAAAGCTGTTCATGATGCTCATGGCCTTACTGGAAACACCGGTGTCGGGATGAA 10461 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 | || || ||||| ||||||||| Sbjct 10462 CTTGTTTAAGCACTTTGTAGATG 10484 >seq5580 Length=7482 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 869173 ATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCC 869232 |||| |||| ||||| || || | |||||| ||| | || |||||||| | || Sbjct 5637 ATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCAAACC 5696 Query 869233 GCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292 | |||||| ||||| || |||| | ||| ||| |||||||| || ||||||||||| Sbjct 5697 TCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGACGGC 5756 Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAA 869319 |||||| |||||| ||||| ||||| Sbjct 5757 TGCAAAGGCGATGACTCGCTCAGCAAA 5783 >seq7813 Length=5936 Score = 87.8 bits (96), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 1628441 CGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCT 1628500 ||||||||||||| |||| | |||||||||||||||| | || ||||||| | | Sbjct 2195 CGCGGCGCATAAACTCGTCAGGCATCCACAGTGCGTAAAATAAATCACGCGCCCTTTGTT 2254 Query 1628501 CCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCT 1628560 | || || || |||||| ||||| || || | |||| || ||| ||||||||||| | Sbjct 2255 CTTCTTTACCAGTGTTCTTCTTGAGATCAAGGAATTCGAAAACGTCAGCGTGCCACGGTT 2314 Query 1628561 CCA 1628563 ||| Sbjct 2315 CCA 2317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102163700334393