Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq46955 123 3e-22
seq7268 100 3e-15
seq5580 95.1 1e-13
seq7813 87.8 2e-11
>seq46955
Length=3063
Score = 123 bits (136), Expect = 3e-22
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||| |||||| ||| || ||| || || || |||||||| || || || ||
Sbjct 2132 GCTTGGCCAACTCGCCGGGCAAGAGCAGACGAACAGCCGTCTGGATTTCCCGACTGGTGA 2073
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||| |||| ||| || || | | ||||||| || | |
Sbjct 2072 TGGTCGAGCGCTTGTTGTAGTGGGCCAAACGCGACGCTTCCGCGGCGATGCGCTCAAAGA 2013
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||||||| |||||| | ||| | |||| |||| | ||| ||||||||
Sbjct 2012 TGTCGTTGACAAAGCTGTTCATAATGCTCATGGCCTTGCTGGAAACGCCAGTGTCGGGGT 1953
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| || ||||||||||||||||| |||
Sbjct 1952 GGACTTGCTTGAGCACCTTGTAAATG 1927
>seq7268
Length=13466
Score = 100 bits (110), Expect = 3e-15
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405
|||||| ||| || ||| || ||| || || |||||||| || || || || || |
Sbjct 10282 TGGCCAATTCACCAGGCAAGAGCAGACGAACAGCGGTCTGAATTTCTCGACTGGTTATGG 10341
Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465
|| ||||| || |||| |||||||| || |||| | | ||||| |||| ||||
Sbjct 10342 TGGAACGCTTATTGTAGTGGGCCAGACGAGAAGCTTCGGCGGCAATGCGCTCGAAAATGT 10401
Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525
|||||||||| |||||||| ||| | ||| |||| | || |||||| || |
Sbjct 10402 CGTTGACAAAGCTGTTCATGATGCTCATGGCCTTACTGGAAACACCGGTGTCGGGATGAA 10461
Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548
| || || ||||| |||||||||
Sbjct 10462 CTTGTTTAAGCACTTTGTAGATG 10484
>seq5580
Length=7482
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 869173 ATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCC 869232
|||| |||| ||||| || || | |||||| ||| | || |||||||| | ||
Sbjct 5637 ATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCAAACC 5696
Query 869233 GCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292
| |||||| ||||| || |||| | ||| ||| |||||||| || |||||||||||
Sbjct 5697 TCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGACGGC 5756
Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAA 869319
|||||| |||||| ||||| |||||
Sbjct 5757 TGCAAAGGCGATGACTCGCTCAGCAAA 5783
>seq7813
Length=5936
Score = 87.8 bits (96), Expect = 2e-11
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1628441 CGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCT 1628500
||||||||||||| |||| | |||||||||||||||| | || ||||||| | |
Sbjct 2195 CGCGGCGCATAAACTCGTCAGGCATCCACAGTGCGTAAAATAAATCACGCGCCCTTTGTT 2254
Query 1628501 CCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCT 1628560
| || || || |||||| ||||| || || | |||| || ||| ||||||||||| |
Sbjct 2255 CTTCTTTACCAGTGTTCTTCTTGAGATCAAGGAATTCGAAAACGTCAGCGTGCCACGGTT 2314
Query 1628561 CCA 1628563
|||
Sbjct 2315 CCA 2317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6102163700334393
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |