Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6222 136 4e-27 seq7813 122 8e-23 seq3468 105 6e-18 seq957 89.7 5e-13 >seq6222 Length=12937 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| | || || ||||| || || | ||||| ||| | || Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| || || |||||||| ||||| || ||||||||||| Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| || || |||| ||| | | | |||| || ||||| Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || ||||| ||||| | || || ||| Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTCCGTGGCGGC 3737 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| ||||| || || | ||||| || || | Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| || ||||||||||||||||| || || ||||||||| Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| || ||||| || || |||||| |||| || | | | | || ||||| || Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAAT 4241 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || || |||||||| | || ||||| || || Sbjct 4240 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGG 4194 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | ||||| ||||| || || | ||||| || | | Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||||||||| || || || || ||| Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| ||||| || || ||||| || | | | |||| ||||| || Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || || |||||||| |||| ||||| || || Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGG 4422 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || || || || ||||| | ||||| || | || Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||||||||||||||| || |||||||||||| Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || ||||| |||| || | | | |||| || || ||| Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || || |||||||| | || ||||| || || Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGG 4878 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || || || || || || | ||||| ||| | || Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| || ||||| |||||||| || ||||| ||||| Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAA-ATTCAAGATAAAGAAGGCATTCCTCCTGATCA 4758 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| || || ||||| ||||| |||| || | | | |||| || || || Sbjct 4757 ACAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAA 4698 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||||||| ||||| || ||||| Sbjct 4697 CATTCAAAAGGAATCTACACTCCATTTGGT 4668 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || |||||||| ||||||||||| | | Sbjct 5332 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTCG 5273 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || |||||||||||||| || || || || || Sbjct 5272 GATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCAG 5213 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| || || || || || || |||| ||| | | |||||||||| ||| Sbjct 5212 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACAAC 5153 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||||| ||||| | || || ||| Sbjct 5152 ATTCAGAAAGAATCCACCCTGCATTTGGTATTGCGTCTCCGTGGTGGC 5105 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || || || || || | ||||| ||| | | Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||||||||| ||||| || ||||||||||| Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCCGATCA 4074 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||||||||| |||||||| || ||| | || ||| | | |||| || || || Sbjct 4073 ACAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAA 4014 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || ||||| || || || | || |||| |||| || || Sbjct 4013 CATCCAGAAAGAATCTACTCTTCATCTAGTCCTGCGTCTGCGTGGTGG 3966 >seq7813 Length=5936 Score = 122 bits (134), Expect = 8e-23 Identities = 312/463 (67%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || || | ||||| || || | |||||| || | |||||||||||||| | Sbjct 1872 AATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATTTCCGT 1931 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 ||||| ||| || ||||| || || | ||||| ||||| |||||||||||| || Sbjct 1932 ACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTACAGGC 1991 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259 ||| ||||| || || || || ||||| ||||||||||| | || ||||| | || Sbjct 1992 ATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAAT--AGCCGAC 2049 Query 139260 C-AAGTCCCT-AGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTTTCGT 139315 | |||| || || | | ||||||| || | | || | ||| ||||||| || Sbjct 2050 CAAAGTTGCTGGGCACGAACTTGACGC-CG-ATATTTGCCCTCGGATTCGTACTGACGGT 2107 Query 139316 AGAGTTCGTCGAA--TCGTTCACCGTAGGCGTCA-GAAAGATCGCGACACTTGTCAGGAC 139372 | | | || || || || || ||| |||| | ||| || | || | |||| | Sbjct 2108 ATAAAGCTTCAAATTTCTCTCCCCATAG--GTCATGCAAGCCCG-GGCATTCTGCAGGGC 2164 Query 139373 ACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACA 139432 |||| | ||| | ||||| | ||||| | ||| ||| || || ||||||| Sbjct 2165 ACATCAAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCACA 2224 Query 139433 AAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAA 139492 ||| | | ||||| |||||| | | ||||| ||| |||| || | | || Sbjct 2225 GTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTTGAGATCAA 2284 Query 139493 GGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGC 139535 |||| || ||||||||||||||||| ||||||| ||| || || Sbjct 2285 GGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGC 2327 >seq3468 Length=50068 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || ||||| || || || || || || || | Sbjct 38275 ACCATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 38334 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| || || || ||||||||||| |||||||| || |||||| Sbjct 38335 TCAGACACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGAT 38394 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 ||||||||||||||||| ||||| ||||| |||| || Sbjct 38395 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGA 38432 >seq957 Length=45873 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || |||||||||||||| ||||||||||| ||||| || || |||| ||| | Sbjct 36291 AGGTATTCCTCCCGATCAACAGCGTTTGATCTTCGCCGGCAAGCAATTGGAAGATGGACG 36350 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 | | |||| || |||||||| || |||||||| || | ||||||||| Sbjct 36351 CACCTTGTCGGACTATAACATCCAGAAGGAATCCACTTTGCACTTGGTG 36399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449556639480120