Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 136 4e-27
seq7813 122 8e-23
seq3468 105 6e-18
seq957 89.7 5e-13
>seq6222
Length=12937
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | ||||| | || || ||||| || || | ||||| ||| | ||
Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| || || |||||||| ||||| || |||||||||||
Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||||||||||| ||||| || || |||| ||| | | | |||| || |||||
Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || |||||||| || || || ||||| ||||| | || || |||
Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTCCGTGGCGGC 3737
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || || || ||||| ||||| || || | ||||| || || |
Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| || ||||||||||||||||| || || |||||||||
Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||||| || ||||| || || |||||| |||| || | | | | || ||||| ||
Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAAT 4241
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| ||||| ||||| || || |||||||| | || ||||| || ||
Sbjct 4240 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGG 4194
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || | ||||| ||||| || || | ||||| || | |
Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| |||||||||||||||||||| || || || || |||
Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| | ||||| ||||| || || ||||| || | | | |||| ||||| ||
Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| ||||| ||||| || || |||||||| |||| ||||| || ||
Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGG 4422
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| | || || || || ||||| | ||||| || | ||
Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || || ||||||||||||||||| || ||||||||||||
Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||||||||||| || || || ||||| |||| || | | | |||| || || |||
Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| ||||| ||||| || || |||||||| | || ||||| || ||
Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGG 4878
Score = 129 bits (142), Expect = 5e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| || || || || || || || | ||||| ||| | ||
Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | ||| || ||||| |||||||| || ||||| |||||
Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAA-ATTCAAGATAAAGAAGGCATTCCTCCTGATCA 4758
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||||||||| || || ||||| ||||| |||| || | | | |||| || || ||
Sbjct 4757 ACAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAA 4698
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||||||||| ||||| || |||||
Sbjct 4697 CATTCAAAAGGAATCTACACTCCATTTGGT 4668
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || || || || |||||||| ||||||||||| | |
Sbjct 5332 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTCG 5273
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || ||| || || |||||||||||||| || || || || ||
Sbjct 5272 GATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCAG 5213
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||||| || || || || || || |||| ||| | | |||||||||| |||
Sbjct 5212 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACAAC 5153
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| || ||||| || || || ||||| ||||| | || || |||
Sbjct 5152 ATTCAGAAAGAATCCACCCTGCATTTGGTATTGCGTCTCCGTGGTGGC 5105
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || || || || || || || | ||||| ||| | |
Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| || | ||| ||||||||||| ||||| || |||||||||||
Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCCGATCA 4074
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|||||||||||| |||||||| || ||| | || ||| | | |||| || || ||
Sbjct 4073 ACAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAA 4014
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || || ||||| || || || | || |||| |||| || ||
Sbjct 4013 CATCCAGAAAGAATCTACTCTTCATCTAGTCCTGCGTCTGCGTGGTGG 3966
>seq7813
Length=5936
Score = 122 bits (134), Expect = 8e-23
Identities = 312/463 (67%), Gaps = 14/463 (3%)
Strand=Plus/Plus
Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139
||| || || | ||||| || || | |||||| || | |||||||||||||| |
Sbjct 1872 AATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATTTCCGT 1931
Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199
||||| ||| || ||||| || || | ||||| ||||| |||||||||||| ||
Sbjct 1932 ACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTACAGGC 1991
Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259
||| ||||| || || || || ||||| ||||||||||| | || ||||| | ||
Sbjct 1992 ATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAAT--AGCCGAC 2049
Query 139260 C-AAGTCCCT-AGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTTTCGT 139315
| |||| || || | | ||||||| || | | || | ||| ||||||| ||
Sbjct 2050 CAAAGTTGCTGGGCACGAACTTGACGC-CG-ATATTTGCCCTCGGATTCGTACTGACGGT 2107
Query 139316 AGAGTTCGTCGAA--TCGTTCACCGTAGGCGTCA-GAAAGATCGCGACACTTGTCAGGAC 139372
| | | || || || || || ||| |||| | ||| || | || | |||| |
Sbjct 2108 ATAAAGCTTCAAATTTCTCTCCCCATAG--GTCATGCAAGCCCG-GGCATTCTGCAGGGC 2164
Query 139373 ACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACA 139432
|||| | ||| | ||||| | ||||| | ||| ||| || || |||||||
Sbjct 2165 ACATCAAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCACA 2224
Query 139433 AAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAA 139492
||| | | ||||| |||||| | | ||||| ||| |||| || | | ||
Sbjct 2225 GTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTTGAGATCAA 2284
Query 139493 GGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGC 139535
|||| || ||||||||||||||||| ||||||| ||| || ||
Sbjct 2285 GGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGC 2327
>seq3468
Length=50068
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || | || ||||| || || || || || || || |
Sbjct 38275 ACCATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 38334
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | |||| || || || ||||||||||| |||||||| || ||||||
Sbjct 38335 TCAGACACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGAT 38394
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858
||||||||||||||||| ||||| ||||| |||| ||
Sbjct 38395 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGA 38432
>seq957
Length=45873
Score = 89.7 bits (98), Expect = 5e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864
||| || |||||||||||||| ||||||||||| ||||| || || |||| ||| |
Sbjct 36291 AGGTATTCCTCCCGATCAACAGCGTTTGATCTTCGCCGGCAAGCAATTGGAAGATGGACG 36350
Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913
| | |||| || |||||||| || |||||||| || | |||||||||
Sbjct 36351 CACCTTGTCGGACTATAACATCCAGAAGGAATCCACTTTGCACTTGGTG 36399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449556639480120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |