Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq96 95.1 1e-14
seq6222 89.7 4e-13
>seq96
Length=47675
Score = 95.1 bits (104), Expect = 1e-14
Identities = 194/283 (69%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATG-CGAGAAGTGTAGCGTGCCGTGATA 34262
|| ||||||||||| ||||| || | | |||||| || | | || || || ||
Sbjct 2697 GGTGGGTTTTTCAGAATGAACGTTGTCAACTTATGGCGCATATCCAATTGT-CCTTGGTA 2755
Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTT-TTAGCGGACACGATGAGCTCAG 34321
|| || ||||| ||| || | ||||| | |||| || || || | || | |
Sbjct 2756 TCCACAGGCTTTACAGGTTTGTCCAATAAT-TCCTTTCTTGGCATTGACCAAAAGAACGG 2814
Query 34322 TCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGT 34381
| || || || || || | || || | ||||||||| ||| || ||||| | ||
Sbjct 2815 TTTCGGGATTATCGCAGCCAGGGCAGAGCACAAACTTCTTGATAAAGCCATCCAACATCC 2874
Query 34382 CCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGA 34441
| || | ||| | ||| |||| ||||||||||| || || ||||| ||| ||||||
Sbjct 2875 CTTGAAGCTTCGAAGCGTCATGGGCACCGTTGACGATAAAGCGATCGTTCTTGAAATCGA 2934
Query 34442 CCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484
||||||||||| ||||| ||||| || ||| ||||||| ||
Sbjct 2935 ATTGCGTTTGCGCACCCAGTTCGCAACCAAAGAACTTTGTAGG 2977
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
|| || | ||| || || || ||||| || | |||||| ||||||||||| ||||| ||
Sbjct 3051 GCGGGTCTTCCCAGAGCTTTTGCGATATCAGCCATGTTCACGATGACAGTTTTGATACCA 3110
Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATG-CGCGGCATTTTGTAGCGGTAGAACGCGTC 34610
||||| || ||||| || ||||| ||| | | ||||| ||||| ||||| ||||| ||
Sbjct 3111 TTGCCTTTGCCTTCCACTTTGGC-AAGAAGCCTGGGCATCTTGTAACGGTAAAACGCATC 3169
Query 34611 CGCCACATTGCGGTTAACGTT 34631
|| || | | ||| |||||
Sbjct 3170 CGAAACGCTCCTGTTCACGTT 3190
>seq6222
Length=12937
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || |||||||| || || ||||| ||||||||| | ||| ||||| |
Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | || || || || |||||||||||| | || ||||||
Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | | |||| || || ||||| |||| || | | | || || | || ||||||
Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499
|| ||||||||||| || | ||| |||| | | ||||||| ||
Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGG 4878
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || || || ||||| |||||||||||||| || | ||| |||||
Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | || ||| ||||| |||||||||||| | ||| || |||
Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | || || || || ||||| || | | || || | ||||||||
Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499
|| ||||||||||| || | ||| |||| | | ||||||| ||
Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGG 4422
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330
|||||||||| || || || || | || ||||| || |||||| ||||| ||||||
Sbjct 5334 AAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTT 5275
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
||||| | | | || ||| || ||| ||||||||||| | ||| || |
Sbjct 5274 CGGATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACC 5215
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| ||| | | |||| || || || || |||| |||| | || || | |||||||
Sbjct 5214 AGCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACA 5155
Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
||||||| |||||||| || |||| |||| ||
Sbjct 5154 ACATTCAGAAAGAATCCACCCTGCATTTGGTATT 5121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412536544762097
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |