Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq96 95.1 1e-14 seq6222 89.7 4e-13 >seq96 Length=47675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 194/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATG-CGAGAAGTGTAGCGTGCCGTGATA 34262 || ||||||||||| ||||| || | | |||||| || | | || || || || Sbjct 2697 GGTGGGTTTTTCAGAATGAACGTTGTCAACTTATGGCGCATATCCAATTGT-CCTTGGTA 2755 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTT-TTAGCGGACACGATGAGCTCAG 34321 || || ||||| ||| || | ||||| | |||| || || || | || | | Sbjct 2756 TCCACAGGCTTTACAGGTTTGTCCAATAAT-TCCTTTCTTGGCATTGACCAAAAGAACGG 2814 Query 34322 TCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGT 34381 | || || || || || | || || | ||||||||| ||| || ||||| | || Sbjct 2815 TTTCGGGATTATCGCAGCCAGGGCAGAGCACAAACTTCTTGATAAAGCCATCCAACATCC 2874 Query 34382 CCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGA 34441 | || | ||| | ||| |||| ||||||||||| || || ||||| ||| |||||| Sbjct 2875 CTTGAAGCTTCGAAGCGTCATGGGCACCGTTGACGATAAAGCGATCGTTCTTGAAATCGA 2934 Query 34442 CCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||||||||||| ||||| ||||| || ||| ||||||| || Sbjct 2935 ATTGCGTTTGCGCACCCAGTTCGCAACCAAAGAACTTTGTAGG 2977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || | ||| || || || ||||| || | |||||| ||||||||||| ||||| || Sbjct 3051 GCGGGTCTTCCCAGAGCTTTTGCGATATCAGCCATGTTCACGATGACAGTTTTGATACCA 3110 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATG-CGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 ||||| || ||||| || ||||| ||| | | ||||| ||||| ||||| ||||| || Sbjct 3111 TTGCCTTTGCCTTCCACTTTGGC-AAGAAGCCTGGGCATCTTGTAACGGTAAAACGCATC 3169 Query 34611 CGCCACATTGCGGTTAACGTT 34631 || || | | ||| ||||| Sbjct 3170 CGAAACGCTCCTGTTCACGTT 3190 >seq6222 Length=12937 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| || || ||||| ||||||||| | ||| ||||| | Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || || |||||||||||| | || |||||| Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || || ||||| |||| || | | | || || | || |||||| Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499 || ||||||||||| || | ||| |||| | | ||||||| || Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGG 4878 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || ||||| |||||||||||||| || | ||| ||||| Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| ||||| |||||||||||| | ||| || ||| Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | || || || || ||||| || | | || || | |||||||| Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499 || ||||||||||| || | ||| |||| | | ||||||| || Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGG 4422 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330 |||||||||| || || || || | || ||||| || |||||| ||||| |||||| Sbjct 5334 AAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTT 5275 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | || ||| || ||| ||||||||||| | ||| || | Sbjct 5274 CGGATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACC 5215 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||| | | |||| || || || || |||| |||| | || || | ||||||| Sbjct 5214 AGCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACA 5155 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||||| |||||||| || |||| |||| || Sbjct 5154 ACATTCAGAAAGAATCCACCCTGCATTTGGTATT 5121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412536544762097