Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq46955 152 8e-31
seq5580 105 1e-16
seq4727 105 1e-16
seq7268 93.3 7e-13
>seq46955
Length=3063
Score = 152 bits (168), Expect = 8e-31
Identities = 182/245 (74%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||| | ||||| || || |||||||||| |||||| |||||| |||
Sbjct 2171 TGTACTTGGTGACGTCTTTGGTGCCTTCACTGACGGCGTGCTTGGCCAACTCGCCGGGCA 2112
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587
|| ||| || || || |||||||| || || || ||| || ||||||||| |||
Sbjct 2111 AGAGCAGACGAACAGCCGTCTGGATTTCCCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 2052
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| || | ||| | || || | | ||||||| || | |||||||||||||| |||
Sbjct 2051 GGGCCAAACGCGAC--GCTTCCGCGGCGATGCGCTCAAAGATGTCGTTGACAAAGCTGTT 1994
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
||| || ||| | ||| |||| | ||| ||||||||| || ||||||||||||||
Sbjct 1993 CATAATGCTCATGGCCTTGCTGGAAACGCCAGTGTCGGGGTGGACTTGCTTGAGCACCTT 1934
Query 1485708 GTAAA 1485712
|||||
Sbjct 1933 GTAAA 1929
>seq5580
Length=7482
Score = 105 bits (116), Expect = 1e-16
Identities = 202/295 (68%), Gaps = 11/295 (4%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| |||||||| | || | |||||| ||||| || |||| ||| ||| ||||||
Sbjct 5680 AGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAA 5739
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
|| || ||||||||||| |||||| ||| || ||||| |||||| || | || |
Sbjct 5740 AAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAA----CCTG---CTGT 5792
Query 794497 -TTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTC 794552
|||| |||||| || | ||||| || ||||| ||| | || | || | || ||
Sbjct 5793 GTTGTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTC 5852
Query 794553 GATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612
||| || || || || | ||||| | || || || |||||||| | ||
Sbjct 5853 GATAGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAG 5912
Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
|| || | || || || |||||||| ||||| ||||||||||| || || |||
Sbjct 5913 TGAATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAG 5967
>seq4727
Length=4377
Score = 105 bits (116), Expect = 1e-16
Identities = 170/242 (70%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||| |||||||| || || |||||| |||||| ||| || |||
Sbjct 2304 TGTACTTGGTGACGGCTTTGGTACCTTCACTCACAGCGTGCTTGGCCAATTCACCAGGCA 2363
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| |||||| || || || || || || | || || ||| |||||||| || |
Sbjct 2364 AGAGCAGGCGAACCGCTGTTTGAATTTCCCTACTGGTAATGGTGGAACGCTTGTT-GTAC 2422
Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
| ||||| || || || | | ||||| |||| |||||||| || || |||
Sbjct 2423 TGGGCCAGACGAGAAGCTTCAGCTGCAATGCGCTCGAAAATGTCGTTCACGAAGCTATTC 2482
Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||||| ||| | ||| | || | ||| ||||||||| |||||||| | ||| |||
Sbjct 2483 ATGATGCTCATGGCCTTGCTAGAAACGCCGGTGTCGGGGTGAACCTGCTTCAACACTTTG 2542
Query 1485709 TA 1485710
||
Sbjct 2543 TA 2544
>seq7268
Length=13466
Score = 93.3 bits (102), Expect = 7e-13
Identities = 164/239 (69%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
||||| || ||||| || || || || || ||||| |||||| ||| || ||| |
Sbjct 10242 TACTTTGTAACGGCTTTCGTGCCTTCGCTCACTGCGTGTTTGGCCAATTCACCAGGCAAG 10301
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591
| ||| || || |||||||| || || || || || ||| ||||| || | |
Sbjct 10302 AGCAGACGAACAGCGGTCTGAATTTCTCGACTGGTTATGGTGGAACGCTTATTGTAGTGG 10361
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
||||| || || |||| | | ||||| |||| |||||||||||||| |||||||
Sbjct 10362 GCCAGACGAGAAGCTTCGGCGGCAATGCGCTCGAAAATGTCGTTGACAAAGCTGTTCATG 10421
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710
|| ||| | || |||| | || |||||| || || || || ||||| |||||
Sbjct 10422 ATGCTCATGGCCTTACTGGAAACACCGGTGTCGGGATGAACTTGTTTAAGCACTTTGTA 10480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7909797016741131
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |