Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq46955 152 8e-31 seq5580 105 1e-16 seq4727 105 1e-16 seq7268 93.3 7e-13 >seq46955 Length=3063 Score = 152 bits (168), Expect = 8e-31 Identities = 182/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||| | ||||| || || |||||||||| |||||| |||||| ||| Sbjct 2171 TGTACTTGGTGACGTCTTTGGTGCCTTCACTGACGGCGTGCTTGGCCAACTCGCCGGGCA 2112 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 || ||| || || || |||||||| || || || ||| || ||||||||| ||| Sbjct 2111 AGAGCAGACGAACAGCCGTCTGGATTTCCCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 2052 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || | ||| | || || | | ||||||| || | |||||||||||||| ||| Sbjct 2051 GGGCCAAACGCGAC--GCTTCCGCGGCGATGCGCTCAAAGATGTCGTTGACAAAGCTGTT 1994 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | ||| |||| | ||| ||||||||| || |||||||||||||| Sbjct 1993 CATAATGCTCATGGCCTTGCTGGAAACGCCAGTGTCGGGGTGGACTTGCTTGAGCACCTT 1934 Query 1485708 GTAAA 1485712 ||||| Sbjct 1933 GTAAA 1929 >seq5580 Length=7482 Score = 105 bits (116), Expect = 1e-16 Identities = 202/295 (68%), Gaps = 11/295 (4%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || |||||||| | || | |||||| ||||| || |||| ||| ||| |||||| Sbjct 5680 AGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAA 5739 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || ||||||||||| |||||| ||| || ||||| |||||| || | || | Sbjct 5740 AAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAA----CCTG---CTGT 5792 Query 794497 -TTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTC 794552 |||| |||||| || | ||||| || ||||| ||| | || | || | || || Sbjct 5793 GTTGTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTC 5852 Query 794553 GATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612 ||| || || || || | ||||| | || || || |||||||| | || Sbjct 5853 GATAGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAG 5912 Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || | || || || |||||||| ||||| ||||||||||| || || ||| Sbjct 5913 TGAATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAG 5967 >seq4727 Length=4377 Score = 105 bits (116), Expect = 1e-16 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| |||||||| || || |||||| |||||| ||| || ||| Sbjct 2304 TGTACTTGGTGACGGCTTTGGTACCTTCACTCACAGCGTGCTTGGCCAATTCACCAGGCA 2363 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || |||||| || || || || || || | || || ||| |||||||| || | Sbjct 2364 AGAGCAGGCGAACCGCTGTTTGAATTTCCCTACTGGTAATGGTGGAACGCTTGTT-GTAC 2422 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| || || || | | ||||| |||| |||||||| || || ||| Sbjct 2423 TGGGCCAGACGAGAAGCTTCAGCTGCAATGCGCTCGAAAATGTCGTTCACGAAGCTATTC 2482 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| | || | ||| ||||||||| |||||||| | ||| ||| Sbjct 2483 ATGATGCTCATGGCCTTGCTAGAAACGCCGGTGTCGGGGTGAACCTGCTTCAACACTTTG 2542 Query 1485709 TA 1485710 || Sbjct 2543 TA 2544 >seq7268 Length=13466 Score = 93.3 bits (102), Expect = 7e-13 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| || ||||| || || || || || ||||| |||||| ||| || ||| | Sbjct 10242 TACTTTGTAACGGCTTTCGTGCCTTCGCTCACTGCGTGTTTGGCCAATTCACCAGGCAAG 10301 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | ||| || || |||||||| || || || || || ||| ||||| || | | Sbjct 10302 AGCAGACGAACAGCGGTCTGAATTTCTCGACTGGTTATGGTGGAACGCTTATTGTAGTGG 10361 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| || || |||| | | ||||| |||| |||||||||||||| ||||||| Sbjct 10362 GCCAGACGAGAAGCTTCGGCGGCAATGCGCTCGAAAATGTCGTTGACAAAGCTGTTCATG 10421 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | || |||| | || |||||| || || || || ||||| ||||| Sbjct 10422 ATGCTCATGGCCTTACTGGAAACACCGGTGTCGGGATGAACTTGTTTAAGCACTTTGTA 10480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909797016741131