Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq9686 223 9e-54 seq36558 93.3 1e-14 >seq9686 Length=37809 Score = 223 bits (246), Expect = 9e-54 Identities = 283/386 (73%), Gaps = 10/386 (3%) Strand=Plus/Plus Query 38620 GATGAGGCTGTACGAAATGCTGAATCAGCAACAGCCATTACCAATAACGTCCTGCAATCA 38679 |||||||| || || |||||||| | |||||| ||| ||| || | | | | Sbjct 4415 GATGAGGCGATATCGAAGGCTGAATCCTCTGAAGCCATCACCGCAAACATCATCCGA--A 4472 Query 38680 CTACAAA--TCGTCAATACAGTTCTGGAGGCTAACCAGCATGCAAAACAACAGATCGCAC 38737 |||| || || |||| || || ||||| || |||||||| ||||| |||||||||| Sbjct 4473 CTACCAACATCATCAACACCATTACTGAGGCAAATCAGCATGCCAAACAGCAGATCGCAC 4532 Query 38738 TGGAGTCACAGAGAACCCAGGCT---GATATCAAAGTGGCTGTTGCGGATGATGATTGTG 38794 |||||||||||| || ||| || |||||||||||||||||| |||||||||| Sbjct 4533 TGGAGTCACAGAATGCC---GCTAACGACATCAAAGTGGCTGTTGCGAATGATGATTGCT 4589 Query 38795 CTGTACGCCCTGTGCCTGCTGCCGCTGCTGACCGGTTGCGAAAGTTCGCGGACAGTTTAC 38854 || | | |||||||| ||| |||||| ||||| |||| ||| ||| |||||||||| Sbjct 4590 CTCGTCAGCTTGTGCCTGTTGCAGCTGCTAACCGGCTGCGGCAGTACGCAGACAGTTTAC 4649 Query 38855 GTGCCAGTTCCGGCTATACCGTTACCGGCGAGTCTGACCGCTGAAACCCCGCAACCAGCC 38914 ||||||| || | | ||| | ||| | | ||||| ||||||| || || ||| | Sbjct 4650 GTGCCAGCACCAGTGGTTCCGATTCCGTCAAACCTGACTTCTGAAACGCCCCAGCCAACG 4709 Query 38915 ATTTCTGAACCGCTGACTTATGCGGGTAGCCTAGATTTGAATGTCAGTCTGTTGTCGGCG 38974 ||||| || |||||| |||||| ||| || || ||| ||||||| | ||||| | || Sbjct 4710 ATTTCCGATCCGCTGTCTTATGGGGGCAGTCTGGATCTGAATGTGAACTTGTTGGCTGCA 4769 Query 38975 CTAGGGCAGTGCAATCTGGATAAAGC 39000 | |||||||||||| ||||| || Sbjct 4770 TTGGGGCAGTGCAATGCCGATAAGGC 4795 Score = 80.6 bits (88), Expect = 7e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 17245 AATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGT 17304 |||||||| | || |||||| | || | || || || ||||||||| |||||||||| Sbjct 25133 AATCCGTTCGCAGACATCAAAGCCGACGCTACCGTAAACACGGCTCTCTCAAACCTTGGT 25192 Query 17305 TTGGGAGAAGCAGCTAAAAGGAATGTAGGTACAGGGGCGAATCAGATACCTGATATG 17361 ||| ||| || || ||||| |||| ||||| ||||| || || || || || ||| Sbjct 25193 TTGAAAGAGGCGGCAAAAAGAGATGTTGGTACCGGGGCAAACCAAATTCCGGACATG 25249 >seq36558 Length=1237 Score = 93.3 bits (102), Expect = 1e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 18917 TTACGTCGCCACACGGCCATCAGAAGTGCATT-CAGGACAATATCCTTTGTCATCCGGGG 18975 ||||| ||||| | ||||| | ||||||| |||| ||| | | |||||||| | Sbjct 1096 TTACGCCGCCATAGCGCCATTTGCAGTGCATCACAGG-CAAGCTGAGTCGTCATCCGTGA 1038 Query 18976 CTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAG 19035 |||||||||||| ||||| ||||| ||||||||| ||||| ||||||||||| Sbjct 1037 TGACATTGACCAGCCGATAACCGCCCGCGACCACAGGTCAATCACCACCGCCAGATACAG 978 Query 19036 CCAGCCTTCGTGAGTCCGGATGTAGGTGATGTC 19068 |||||| || | || || | ||| |||||||| Sbjct 977 CCAGCCCTCATCGGTGCGAAGGTACGTGATGTC 945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127012489012560