Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_022749.1
Length=39758
Score E
Sequences producing significant alignments: (Bits) Value
seq9686 223 9e-54
seq36558 93.3 1e-14
>seq9686
Length=37809
Score = 223 bits (246), Expect = 9e-54
Identities = 283/386 (73%), Gaps = 10/386 (3%)
Strand=Plus/Plus
Query 38620 GATGAGGCTGTACGAAATGCTGAATCAGCAACAGCCATTACCAATAACGTCCTGCAATCA 38679
|||||||| || || |||||||| | |||||| ||| ||| || | | | |
Sbjct 4415 GATGAGGCGATATCGAAGGCTGAATCCTCTGAAGCCATCACCGCAAACATCATCCGA--A 4472
Query 38680 CTACAAA--TCGTCAATACAGTTCTGGAGGCTAACCAGCATGCAAAACAACAGATCGCAC 38737
|||| || || |||| || || ||||| || |||||||| ||||| ||||||||||
Sbjct 4473 CTACCAACATCATCAACACCATTACTGAGGCAAATCAGCATGCCAAACAGCAGATCGCAC 4532
Query 38738 TGGAGTCACAGAGAACCCAGGCT---GATATCAAAGTGGCTGTTGCGGATGATGATTGTG 38794
|||||||||||| || ||| || |||||||||||||||||| ||||||||||
Sbjct 4533 TGGAGTCACAGAATGCC---GCTAACGACATCAAAGTGGCTGTTGCGAATGATGATTGCT 4589
Query 38795 CTGTACGCCCTGTGCCTGCTGCCGCTGCTGACCGGTTGCGAAAGTTCGCGGACAGTTTAC 38854
|| | | |||||||| ||| |||||| ||||| |||| ||| ||| ||||||||||
Sbjct 4590 CTCGTCAGCTTGTGCCTGTTGCAGCTGCTAACCGGCTGCGGCAGTACGCAGACAGTTTAC 4649
Query 38855 GTGCCAGTTCCGGCTATACCGTTACCGGCGAGTCTGACCGCTGAAACCCCGCAACCAGCC 38914
||||||| || | | ||| | ||| | | ||||| ||||||| || || ||| |
Sbjct 4650 GTGCCAGCACCAGTGGTTCCGATTCCGTCAAACCTGACTTCTGAAACGCCCCAGCCAACG 4709
Query 38915 ATTTCTGAACCGCTGACTTATGCGGGTAGCCTAGATTTGAATGTCAGTCTGTTGTCGGCG 38974
||||| || |||||| |||||| ||| || || ||| ||||||| | ||||| | ||
Sbjct 4710 ATTTCCGATCCGCTGTCTTATGGGGGCAGTCTGGATCTGAATGTGAACTTGTTGGCTGCA 4769
Query 38975 CTAGGGCAGTGCAATCTGGATAAAGC 39000
| |||||||||||| ||||| ||
Sbjct 4770 TTGGGGCAGTGCAATGCCGATAAGGC 4795
Score = 80.6 bits (88), Expect = 7e-11
Identities = 88/117 (75%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 17245 AATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGT 17304
|||||||| | || |||||| | || | || || || ||||||||| ||||||||||
Sbjct 25133 AATCCGTTCGCAGACATCAAAGCCGACGCTACCGTAAACACGGCTCTCTCAAACCTTGGT 25192
Query 17305 TTGGGAGAAGCAGCTAAAAGGAATGTAGGTACAGGGGCGAATCAGATACCTGATATG 17361
||| ||| || || ||||| |||| ||||| ||||| || || || || || |||
Sbjct 25193 TTGAAAGAGGCGGCAAAAAGAGATGTTGGTACCGGGGCAAACCAAATTCCGGACATG 25249
>seq36558
Length=1237
Score = 93.3 bits (102), Expect = 1e-14
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 18917 TTACGTCGCCACACGGCCATCAGAAGTGCATT-CAGGACAATATCCTTTGTCATCCGGGG 18975
||||| ||||| | ||||| | ||||||| |||| ||| | | |||||||| |
Sbjct 1096 TTACGCCGCCATAGCGCCATTTGCAGTGCATCACAGG-CAAGCTGAGTCGTCATCCGTGA 1038
Query 18976 CTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAG 19035
|||||||||||| ||||| ||||| ||||||||| ||||| |||||||||||
Sbjct 1037 TGACATTGACCAGCCGATAACCGCCCGCGACCACAGGTCAATCACCACCGCCAGATACAG 978
Query 19036 CCAGCCTTCGTGAGTCCGGATGTAGGTGATGTC 19068
|||||| || | || || | ||| ||||||||
Sbjct 977 CCAGCCCTCATCGGTGCGAAGGTACGTGATGTC 945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127012489012560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |