Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 114 2e-20
>seq6222
Length=12937
Score = 114 bits (126), Expect = 2e-20
Identities = 150/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||| | || ||||| || || ||| | || || |||| | ||
Sbjct 4875 TGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCCG 4816
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| | || || ||| ||||| ||| ||||||||||||||| || |||||||
Sbjct 4815 ACACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAAC 4756
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | ||||| || || |||||||| || || | | || | | || || || |
Sbjct 4755 AACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAACA 4696
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| ||||| ||||| || ||||||| ||
Sbjct 4695 TTCAAAAGGAATCTACACTCCATTTGGT 4668
Score = 109 bits (120), Expect = 9e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || | || || ||||| || ||| | || || || | |
Sbjct 4419 TGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCTG 4360
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| |||| || ||| ||||| ||| |||||||||||||| ||||||||||
Sbjct 4359 ACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAAC 4300
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| || | || || || || ||||| || || || | | || ||| | ||||| ||||
Sbjct 4299 AACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAATA 4240
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||| || | || || || |||| || |||| ||||
Sbjct 4239 TCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGGTA 4192
Score = 105 bits (116), Expect = 1e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||| || || || || || ||||| | || || || | ||
Sbjct 5103 TGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCCG 5044
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| |||| || || |||||| ||| |||||||||||||| ||||||||||
Sbjct 5043 ACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAAC 4984
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | ||||| || || |||||||| || || | || || | || || || |
Sbjct 4983 AACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAACA 4924
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||| || | || || || | || || |||| ||||
Sbjct 4923 TCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGGTA 4876
Score = 100 bits (110), Expect = 4e-16
Identities = 149/209 (71%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| || || ||||||| | || || || || || ||| | || || |||| || |
Sbjct 4191 TGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA- 4133
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || ||| | || || || |||||| ||| || ||||||||||| |||||||||
Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAA 4073
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
||| | | |||||||| || || || ||||| ||| | | || || | || || ||
Sbjct 4072 CAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAAC 4013
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239
|| || |||||||| ||| | ||| ||||
Sbjct 4012 ATCCAGAAAGAATCTACTCTTCATCTAGT 3984
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || || || || ||||| || ||| | || || || | |
Sbjct 4647 TGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCTG 4588
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| |||| || ||| || || ||| |||||||||||||| || || ||||
Sbjct 4587 ACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAAC 4528
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | ||||| || || || || ||| | || || | | || || | ||||| ||||
Sbjct 4527 AACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAATA 4468
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||| || | || || || | || || |||| ||||
Sbjct 4467 TCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGGTA 4420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785570593966680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |