Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq6222 149 5e-31 >seq6222 Length=12937 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || ||||| ||||| |||||||||||||| || || ||||| | Sbjct 4194 CCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAT 4253 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| || || | ||||||||||| | || |||| ||| ||||| || ||| Sbjct 4254 AAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGA 4313 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| |||||| |||| | |||||||| | || ||| Sbjct 4314 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACT 4373 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || |||||||| || | || || || || |||||||| Sbjct 4374 TCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 149 bits (164), Expect = 5e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||| || ||||||||||| |||||||| ||||| | | || ||| Sbjct 5117 ACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACC 5176 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| |||||||| | || || | |||||| || || || ||||| ||||| Sbjct 5177 ATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTT 5236 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | |||||| |||| | || || ||| | |||||||| || || | Sbjct 5237 GTCTTG-AATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAA 5295 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 |||| ||||| || | ||| || || || || ||||||| Sbjct 5296 TAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTT 5334 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || ||||| ||||| |||||||||||||| ||||| || || | Sbjct 4878 CCGCCTCGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAC 4937 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || | |||||||||||| | ||||| | ||| ||||| || ||| Sbjct 4938 AAGGTACGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGA 4997 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| ||||| |||| | ||||| || | || ||| Sbjct 4998 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACT 5057 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || |||||||| |||||||| || || || ||||| Sbjct 5058 TCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||||||||| ||||| ||||| |||||||||||||| || || ||||| | Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| || || ||||| ||||| || | || | | ||| || || || ||| Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || |||||| |||| | |||||||| | || ||| Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || |||||||| || || || || || || || ||||| Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || || ||||| ||||||||||| || || | | ||| ||| Sbjct 4661 ACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACC 4720 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||||||| || | || || | ||| ||||| || ||||| || ||||| Sbjct 4721 GTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTT 4780 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | |||||| | || | |||||| ||| |||| ||||| | ||| | Sbjct 4781 ATCTTG-AATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGA 4839 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | ||||| || || || ||||| Sbjct 4840 TCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384934555393689