Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1628 282 3e-70 seq7016 165 6e-35 seq7774 89.7 4e-12 seq985 87.8 1e-11 >seq1628 Length=19996 Score = 282 bits (312), Expect = 3e-70 Identities = 953/1462 (65%), Gaps = 28/1462 (2%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || || ||||| ||||| || | ||| || ||||||||||| ||||| || |||| | Sbjct 19001 ACGTTCAGGATACCGTTGGCGTCGATATCGAAGGTGACTTCAATCTGAGGAACTCCTCGC 18942 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 ||||||| || || || | | || | |||| || || ||||| || | Sbjct 18941 GGAGCAGGCGGAATACCGGTGAGTTCGAACTTGCCCAACAAGTTGTTGTCTTTTGTCATG 18882 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 ||||| || ||| | | ||| || || | | || || || | ||| ||||| Sbjct 18881 GCGCGTTCCCCTTCGTATACTTGAATCAAGACGCCGGGCTGGTTGTCGGCATACGTTGTG 18822 Query 281612 AATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || | ||||| | | || || || || || || | | ||| | |||||||| Sbjct 18821 AA-AGTCTGGGTCTGCTTGGTCGGGATGGTGGTATTACGCTTAATCAAGGGGGTCATAAC 18763 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 ||| ||||| || || | ||| | |||||||| | ||| || | |||| | || ||| Sbjct 18762 ACCGCCAGCGGTCTCGATACCCAACGAAAGAGGGGCGACGTCGAGCAGGAGCAAATCTTG 18703 Query 281731 AAGTTTTTC--ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 | ||| || || | | ||| ||| || ||||| | || ||||| || ||| Sbjct 18702 GACCGCTTCGGATTTGTCTC-CGTGCAA-AATGGCGGCTTGGACGGCGGCACCGTAAGCA 18645 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAG 281847 |||||||| || || || | | | || |||| ||| || |||||||||| ||| || Sbjct 18644 ACAGCTTCGTCCGGGTTGATGGACTTGTTCAGTTCTTTGCCGTTGAAAAAATCTTGCAAC 18585 Query 281848 AAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 281906 | ||| ||| || || || ||||| | || || || || || |||||||| | | | Sbjct 18584 A-GTT-TCTGCACTTTCGGGATACGCGTGGAGCCACCGACCAAAACAATTTCGTTGATCG 18527 Query 281907 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAA 281966 | ||| || || || | || || |||| ||||| || || | || | | Sbjct 18526 AGGCTTTGTCAAGCTTGGCGTCGCGCAAGGCTTTCTCAACAGGATCCATGGTGGCGCGGA 18467 Query 281967 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTGACATTATAATCAA 282023 | | ||| | ||||| |||||||| || | |||| |||| | | | || | Sbjct 18466 AGAGGTCGGCGCAAAGCTCTTCGAAACGGGCGCGGGTAATCGAAGTG---TAAAAGTCGA 18410 Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 282083 | |||||||||| || || | ||| | || || ||| || || || || || | || | Sbjct 18409 TACCTTCGAACAGCGAGTCGATTTCGACCGAAGCTTGGGTGGAGGACGACAGAGTCCGCT 18350 Query 282084 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT--CAAATC 282141 | || ||||| || || || | || | ||| | || | ||||| | ||| || Sbjct 18349 TGGCCCGTTCGCAAGCCGTACGGAGACGTCGCAGAGCGCGAG--GATTGGTGGACAAGTC 18292 Query 282142 TGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 282201 | | || || || | ||||| |||| || | | || | || || |||||||| Sbjct 18291 TTTCTTGTACTTGCGTTTGAATTCTTGGACGAAGTGATTGACCATGCGGTTGTCAAAATC 18232 Query 282202 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA- 282260 |||||| ||||| | ||||| || | || | | | |||| ||| | || ||||||| Sbjct 18231 TTCACCACCCAAGTGAGTATCACCCGCGGTGGATTTGACTTCGAAGATGCCTTCTTCAAT 18172 Query 282261 -GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | || || ||| |||||| |||||||| |||| ||||| || || | ||| | Sbjct 18171 GGTGAGAATGGAG--ACATCAAAAGTTCCACCGCCCAAGTCAAAGATGAGGATGTTCCGT 18114 Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 || | || || || | |||||| || | ||| ||||| || || || || || Sbjct 18113 TCACCACCCACTTTCTTGTCCAAACCATAGGCGATAGCTGCAGCGGTAGGCTCGTTGATG 18054 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 || | |||||| || | || || || | || || || || |||||||| | || ||| Sbjct 18053 ATACGCAAAACGTTCAAGCCCGCGATGGTACCAGCGTCCTTGGTGGCTTGACGCTGGGAA 17994 Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCG 282499 ||||| || || || || || || | |||||||| | |||| | || | ||||| Sbjct 17993 TCGTTGAAGTAGGCGGGGACCGTGACGACGGCATCGGAGACTTTGCTGCCCAAGTAAGCT 17934 Query 282500 CTTGCTGTTTGTTTCAT-TTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG 282558 ||| |||| | ||| ||||| | || ||| || || |||| ||| || ||| | | Sbjct 17933 TCTGCCGTTTCTCGCATCTTTACC-AGAACCATGGACGAGATTTCTTCGGG-GAAGAAGG 17876 Query 282559 CTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617 ||| | | ||| | || |||| || | ||||| || | | || || |||| Sbjct 17875 CTTTGGTCTCACCCTTGTACTCGACTTGAATCTTGGGTTTGGTATTATCGTTGATGACTT 17816 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 | || ||||| | |||||||| | ||| || | ||||| || | || || | Sbjct 17815 TGAACGGCCAGTGCTTCATATCAGCTTGCACGGTGGCGTCATCGAATCGACGGCCGATAA 17756 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 ||||| |||||||| | || |||| || || | || |||||| ||| || |||| Sbjct 17755 GACGTTTCGCATCAAAGACGGTGTTGGAAGGGTTCATCGCGACTTGATTTTTTGCAGCAT 17696 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | || || ||| | || || || ||||| | || || |||||||| || || ||||| | Sbjct 17695 CGCCGATGAGACGCTCCGTGTCCGTAAAGGCGACGTAGGATGGAGTGGTACGGTTACCCT 17636 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857 | || || ||||| ||||| ||||| || | || ||||||| || ||| | || | Sbjct 17635 GGTCGTTGGCAATGATTTCTACTTTGCCGTGCTGGAATACACCCACGCAAGAGTAGGTGG 17576 Query 282858 TTCCTAAATCAATACCAATAGC 282879 | || || ||||||||||| || Sbjct 17575 TACCCAAGTCAATACCAATTGC 17554 >seq7016 Length=12204 Score = 165 bits (182), Expect = 6e-35 Identities = 370/551 (67%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||| || |||| ||| ||||| || ||||| || || || | || || Sbjct 5891 TTTTTGTCCAAACCGTAGGCAATAGCGGCAGCTGTGGGTTCGTTGATGATACGCAGGACG 5832 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | ||||| || | || || || || || ||||| | || |||||||| || || Sbjct 5831 TTCAAGCCAGCGATGGTACCGGCGTCCTTTGTAGCTTGACGCTGGGAATCGTTGAAGTAA 5772 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || | ||||| | || || || ||| | |||||| || |||| Sbjct 5771 GCGGGGACTGTGACGACGGCGTTGGTGACAGTTTGTCCCAAATAAGCTTCAGCAGTTTCC 5712 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGCTTGGATTCAT 282569 |||||||| | | | ||| || |||| || ||| || |||| || |||| ||| Sbjct 5711 TTCATTTTGGTGAGGACCATGGAGGAAACTTCTTCAGGGAAGAAGGTT--TTGGTTTCTC 5654 Query 282570 T-TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAA 282628 |||| || |||| | | || || ||| | | || |||| || ||||| Sbjct 5653 CCTTGA-ATTCGACTTGGATTTTAGGCTTGCCGCCATCGCTGATGACTTCGAAGGGCCAG 5595 Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688 | ||||| || || || || || ||| | ||| | ||| || | || || ||| Sbjct 5594 TGCTTCATGTCGGACTGGACGGTTGCGTCCTCGAAACGACGACCGATGAGACGCTTAGCA 5535 Query 282689 TCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 282748 ||||| | || ||||| || || | || | || | ||||| || || || |||||| Sbjct 5534 TCAAAGACGGTGTTGGTCGGGTTCATGGCGACCTGGTTCTTGGCGGCGTCGCCGATCAGA 5475 Query 282749 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808 | || || || || || | || || || || || ||||| |||||||| || || ||| Sbjct 5474 CGCTCGGTGTCGGTGAAAGCCACGTAAGAAGGTGTCGTGCGGTTACCTTGGTCGTTGGCA 5415 Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868 |||||||| ||||| |||| ||| ||||||| ||||| | || || || |||||| Sbjct 5414 ATAATTTCCACTTTGCCATGTTGGAATACACCCACACAGGAGTAGGTGGTACCCAAATCA 5355 Query 282869 ATACCAATAGC 282879 || |||||||| Sbjct 5354 ATGCCAATAGC 5344 >seq7774 Length=19145 Score = 89.7 bits (98), Expect = 4e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| ||| |||||||| |||||| ||||||| ||||||||||| ||||| || | || | Sbjct 13350 TGAAAGGCAAAGAAGGGCGTATTCGAGGAAACTTGATGGGAAAACGTGTGGACTTCTCCG 13409 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCA 432402 | ||||| || |||||| ||||||| ||| | | | | | || || || || | | Sbjct 13410 CTCGTACTGTCATTACTCCTGATCCAAATTTACGTATTGACCAGGTCGGCGTACCCCGCT 13469 Query 432403 TTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 432454 ||||| | || | ||||| |||||||| ||| | ||||||||| Sbjct 13470 CCATTGCTCAGAACTTAACTTTCCCTGAAATTGTCACACCATTTAATATTGA 13521 >seq985 Length=45870 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || ||||| | ||| |||| || ||||| ||||||||||| || ||| | ||||| | Sbjct 11061 AATTGTACATTGATTCTGACGGAAGGAGACTCAGCTAAAACTTTGGCTGTCTCTGGATTG 11120 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 || | ||| ||||| | |||||||| || || ||| ||||||||||| | ||||| Sbjct 11121 GGAGTCGTGGGACGAGATAAATATGGAGTATTTCCCCTTCGAGGAAAACTTCTTAATGTG 11180 Query 400414 AGGGATGCTAGTCCTAAA 400431 | || |||| | ||||| Sbjct 11181 CGCGAAGCTACTACTAAA 11198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737653772318154