Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1628 282 3e-70
seq7016 165 6e-35
seq7774 89.7 4e-12
seq985 87.8 1e-11
>seq1628
Length=19996
Score = 282 bits (312), Expect = 3e-70
Identities = 953/1462 (65%), Gaps = 28/1462 (2%)
Strand=Plus/Minus
Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491
|| || || ||||| ||||| || | ||| || ||||||||||| ||||| || |||| |
Sbjct 19001 ACGTTCAGGATACCGTTGGCGTCGATATCGAAGGTGACTTCAATCTGAGGAACTCCTCGC 18942
Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551
||||||| || || || | | || | |||| || || ||||| || |
Sbjct 18941 GGAGCAGGCGGAATACCGGTGAGTTCGAACTTGCCCAACAAGTTGTTGTCTTTTGTCATG 18882
Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611
||||| || ||| | | ||| || || | | || || || | ||| |||||
Sbjct 18881 GCGCGTTCCCCTTCGTATACTTGAATCAAGACGCCGGGCTGGTTGTCGGCATACGTTGTG 18822
Query 281612 AATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670
|| | ||||| | | || || || || || || | | ||| | ||||||||
Sbjct 18821 AA-AGTCTGGGTCTGCTTGGTCGGGATGGTGGTATTACGCTTAATCAAGGGGGTCATAAC 18763
Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730
||| ||||| || || | ||| | |||||||| | ||| || | |||| | || |||
Sbjct 18762 ACCGCCAGCGGTCTCGATACCCAACGAAAGAGGGGCGACGTCGAGCAGGAGCAAATCTTG 18703
Query 281731 AAGTTTTTC--ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788
| ||| || || | | ||| ||| || ||||| | || ||||| || |||
Sbjct 18702 GACCGCTTCGGATTTGTCTC-CGTGCAA-AATGGCGGCTTGGACGGCGGCACCGTAAGCA 18645
Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAG 281847
|||||||| || || || | | | || |||| ||| || |||||||||| ||| ||
Sbjct 18644 ACAGCTTCGTCCGGGTTGATGGACTTGTTCAGTTCTTTGCCGTTGAAAAAATCTTGCAAC 18585
Query 281848 AAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 281906
| ||| ||| || || || ||||| | || || || || || |||||||| | | |
Sbjct 18584 A-GTT-TCTGCACTTTCGGGATACGCGTGGAGCCACCGACCAAAACAATTTCGTTGATCG 18527
Query 281907 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAA 281966
| ||| || || || | || || |||| ||||| || || | || | |
Sbjct 18526 AGGCTTTGTCAAGCTTGGCGTCGCGCAAGGCTTTCTCAACAGGATCCATGGTGGCGCGGA 18467
Query 281967 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTGACATTATAATCAA 282023
| | ||| | ||||| |||||||| || | |||| |||| | | | || |
Sbjct 18466 AGAGGTCGGCGCAAAGCTCTTCGAAACGGGCGCGGGTAATCGAAGTG---TAAAAGTCGA 18410
Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 282083
| |||||||||| || || | ||| | || || ||| || || || || || | || |
Sbjct 18409 TACCTTCGAACAGCGAGTCGATTTCGACCGAAGCTTGGGTGGAGGACGACAGAGTCCGCT 18350
Query 282084 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT--CAAATC 282141
| || ||||| || || || | || | ||| | || | ||||| | ||| ||
Sbjct 18349 TGGCCCGTTCGCAAGCCGTACGGAGACGTCGCAGAGCGCGAG--GATTGGTGGACAAGTC 18292
Query 282142 TGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 282201
| | || || || | ||||| |||| || | | || | || || ||||||||
Sbjct 18291 TTTCTTGTACTTGCGTTTGAATTCTTGGACGAAGTGATTGACCATGCGGTTGTCAAAATC 18232
Query 282202 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA- 282260
|||||| ||||| | ||||| || | || | | | |||| ||| | || |||||||
Sbjct 18231 TTCACCACCCAAGTGAGTATCACCCGCGGTGGATTTGACTTCGAAGATGCCTTCTTCAAT 18172
Query 282261 -GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319
| || || ||| |||||| |||||||| |||| ||||| || || | ||| |
Sbjct 18171 GGTGAGAATGGAG--ACATCAAAAGTTCCACCGCCCAAGTCAAAGATGAGGATGTTCCGT 18114
Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379
|| | || || || | |||||| || | ||| ||||| || || || || ||
Sbjct 18113 TCACCACCCACTTTCTTGTCCAAACCATAGGCGATAGCTGCAGCGGTAGGCTCGTTGATG 18054
Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439
|| | |||||| || | || || || | || || || || |||||||| | || |||
Sbjct 18053 ATACGCAAAACGTTCAAGCCCGCGATGGTACCAGCGTCCTTGGTGGCTTGACGCTGGGAA 17994
Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCG 282499
||||| || || || || || || | |||||||| | |||| | || | |||||
Sbjct 17993 TCGTTGAAGTAGGCGGGGACCGTGACGACGGCATCGGAGACTTTGCTGCCCAAGTAAGCT 17934
Query 282500 CTTGCTGTTTGTTTCAT-TTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG 282558
||| |||| | ||| ||||| | || ||| || || |||| ||| || ||| | |
Sbjct 17933 TCTGCCGTTTCTCGCATCTTTACC-AGAACCATGGACGAGATTTCTTCGGG-GAAGAAGG 17876
Query 282559 CTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617
||| | | ||| | || |||| || | ||||| || | | || || ||||
Sbjct 17875 CTTTGGTCTCACCCTTGTACTCGACTTGAATCTTGGGTTTGGTATTATCGTTGATGACTT 17816
Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677
| || ||||| | |||||||| | ||| || | ||||| || | || || |
Sbjct 17815 TGAACGGCCAGTGCTTCATATCAGCTTGCACGGTGGCGTCATCGAATCGACGGCCGATAA 17756
Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737
||||| |||||||| | || |||| || || | || |||||| ||| || ||||
Sbjct 17755 GACGTTTCGCATCAAAGACGGTGTTGGAAGGGTTCATCGCGACTTGATTTTTTGCAGCAT 17696
Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797
| || || ||| | || || || ||||| | || || |||||||| || || ||||| |
Sbjct 17695 CGCCGATGAGACGCTCCGTGTCCGTAAAGGCGACGTAGGATGGAGTGGTACGGTTACCCT 17636
Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTG 282857
| || || ||||| ||||| ||||| || | || ||||||| || ||| | || |
Sbjct 17635 GGTCGTTGGCAATGATTTCTACTTTGCCGTGCTGGAATACACCCACGCAAGAGTAGGTGG 17576
Query 282858 TTCCTAAATCAATACCAATAGC 282879
| || || ||||||||||| ||
Sbjct 17575 TACCCAAGTCAATACCAATTGC 17554
>seq7016
Length=12204
Score = 165 bits (182), Expect = 6e-35
Identities = 370/551 (67%), Gaps = 6/551 (1%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||| || |||| ||| ||||| || ||||| || || || | || ||
Sbjct 5891 TTTTTGTCCAAACCGTAGGCAATAGCGGCAGCTGTGGGTTCGTTGATGATACGCAGGACG 5832
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| | ||||| || | || || || || || ||||| | || |||||||| || ||
Sbjct 5831 TTCAAGCCAGCGATGGTACCGGCGTCCTTTGTAGCTTGACGCTGGGAATCGTTGAAGTAA 5772
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511
|| || || || | ||||| | || || || ||| | |||||| || ||||
Sbjct 5771 GCGGGGACTGTGACGACGGCGTTGGTGACAGTTTGTCCCAAATAAGCTTCAGCAGTTTCC 5712
Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGCTTGGATTCAT 282569
|||||||| | | | ||| || |||| || ||| || |||| || |||| |||
Sbjct 5711 TTCATTTTGGTGAGGACCATGGAGGAAACTTCTTCAGGGAAGAAGGTT--TTGGTTTCTC 5654
Query 282570 T-TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAA 282628
|||| || |||| | | || || ||| | | || |||| || |||||
Sbjct 5653 CCTTGA-ATTCGACTTGGATTTTAGGCTTGCCGCCATCGCTGATGACTTCGAAGGGCCAG 5595
Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688
| ||||| || || || || || ||| | ||| | ||| || | || || |||
Sbjct 5594 TGCTTCATGTCGGACTGGACGGTTGCGTCCTCGAAACGACGACCGATGAGACGCTTAGCA 5535
Query 282689 TCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 282748
||||| | || ||||| || || | || | || | ||||| || || || ||||||
Sbjct 5534 TCAAAGACGGTGTTGGTCGGGTTCATGGCGACCTGGTTCTTGGCGGCGTCGCCGATCAGA 5475
Query 282749 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808
| || || || || || | || || || || || ||||| |||||||| || || |||
Sbjct 5474 CGCTCGGTGTCGGTGAAAGCCACGTAAGAAGGTGTCGTGCGGTTACCTTGGTCGTTGGCA 5415
Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868
|||||||| ||||| |||| ||| ||||||| ||||| | || || || ||||||
Sbjct 5414 ATAATTTCCACTTTGCCATGTTGGAATACACCCACACAGGAGTAGGTGGTACCCAAATCA 5355
Query 282869 ATACCAATAGC 282879
|| ||||||||
Sbjct 5354 ATGCCAATAGC 5344
>seq7774
Length=19145
Score = 89.7 bits (98), Expect = 4e-12
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342
||| ||| |||||||| |||||| ||||||| ||||||||||| ||||| || | || |
Sbjct 13350 TGAAAGGCAAAGAAGGGCGTATTCGAGGAAACTTGATGGGAAAACGTGTGGACTTCTCCG 13409
Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCA 432402
| ||||| || |||||| ||||||| ||| | | | | | || || || || | |
Sbjct 13410 CTCGTACTGTCATTACTCCTGATCCAAATTTACGTATTGACCAGGTCGGCGTACCCCGCT 13469
Query 432403 TTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 432454
||||| | || | ||||| |||||||| ||| | |||||||||
Sbjct 13470 CCATTGCTCAGAACTTAACTTTCCCTGAAATTGTCACACCATTTAATATTGA 13521
>seq985
Length=45870
Score = 87.8 bits (96), Expect = 1e-11
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 400294 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353
|| ||||| | ||| |||| || ||||| ||||||||||| || ||| | ||||| |
Sbjct 11061 AATTGTACATTGATTCTGACGGAAGGAGACTCAGCTAAAACTTTGGCTGTCTCTGGATTG 11120
Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413
|| | ||| ||||| | |||||||| || || ||| ||||||||||| | |||||
Sbjct 11121 GGAGTCGTGGGACGAGATAAATATGGAGTATTTCCCCTTCGAGGAAAACTTCTTAATGTG 11180
Query 400414 AGGGATGCTAGTCCTAAA 400431
| || |||| | |||||
Sbjct 11181 CGCGAAGCTACTACTAAA 11198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3737653772318154
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