Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_023733.1 Length=154573 Score E Sequences producing significant alignments: (Bits) Value seq21400 86.0 6e-12 seq5570 86.0 6e-12 seq4799 86.0 6e-12 >seq21400 Length=6845 Score = 86.0 bits (94), Expect = 6e-12 Identities = 59/66 (89%), Gaps = 3/66 (5%) Strand=Plus/Plus Query 94574 TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCCCGACT 94633 ||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 4748 TAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCAATCCCCCG--- 4804 Query 94634 CAGCTC 94639 |||||| Sbjct 4805 CAGCTC 4810 >seq5570 Length=4419 Score = 86.0 bits (94), Expect = 6e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 94574 TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCCCG 94630 ||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 61 TAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCAATCCCCCG 5 >seq4799 Length=6538 Score = 86.0 bits (94), Expect = 6e-12 Identities = 59/66 (89%), Gaps = 3/66 (5%) Strand=Plus/Plus Query 94574 TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCCCGACT 94633 ||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 8 TAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCAATCCCCCG--- 64 Query 94634 CAGCTC 94639 |||||| Sbjct 65 CAGCTC 70 Score = 86.0 bits (94), Expect = 6e-12 Identities = 59/66 (89%), Gaps = 3/66 (5%) Strand=Plus/Plus Query 94574 TAGCTCAGTGGTAGAGCGTTCCCTTGGTATGGGAAAGGCCCGGGGTTCAATCCCCCGACT 94633 ||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 187 TAGCTCAGTGGTAGAGCGTTCGCTTTGCATGTGAAAGGCCCGGGGTTCAATCCCCCG--- 243 Query 94634 CAGCTC 94639 |||||| Sbjct 244 CAGCTC 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494130832749720