Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_024365.1
Length=51090
Score E
Sequences producing significant alignments: (Bits) Value
seq9686 300 5e-77
>seq9686
Length=37809
Score = 300 bits (332), Expect = 5e-77
Identities = 516/748 (69%), Gaps = 1/748 (0%)
Strand=Plus/Plus
Query 39917 CATTTGATCGATGCTGACATCTGCATCATGTGGGCCTCATCTGCCTTCACGAAGCAAGGT 39976
||||| | || || || | ||| || | ||||| || || ||| |||| ||||
Sbjct 5041 CATTTACTTGAAGCGGATCTGTGCTTCCTCTGGGCGTCGAACGCTTTCGAGAAGAAAGGG 5100
Query 39977 CGCACAGTGCTGGGCCAAGCCGAACAGGTTGCGTTCCGTGCCGGTGGTTGGCAGAAGGCC 40036
|| | || || || || || ||| | |||||| | || || ||||| |||||||| ||
Sbjct 5101 CGTTCCGTTCTTGGGCAGGCGGAAGAAGTTGCGATGCGGGCAGGTGGATGGCAGAAAGCG 5160
Query 40037 CGGATGGAGCAGCAGATGCGTGACTGGTTCGGCTGCGTACCGAGCTACATCATCACCCTG 40096
|| ||||||||||| ||| || ||||||||| | || ||| | ||||||||| |||
Sbjct 5161 CGCATGGAGCAGCAAATGTACGAATGGTTCGGCAGGGTGCCGCAGTTCATCATCACGCTG 5220
Query 40097 GCTGCCGATTACTGCTCACAGTGCAGCGATGCGGACTTCTGTGCACTGGTCGAGCATGAG 40156
|| || |||||||| || || || |||| ||| ||||| || ||| | ||||| |||
Sbjct 5221 GCAGCAGATTACTGTTCGCAATGTTCCGATCTGGAGTTCTGCGCCCTGTTAGAGCACGAG 5280
Query 40157 CTCTACCACATCGCCCAGGCAGTCGATCAGTACGGCGCGCCCAAGTTCACGCAAGACGGA 40216
|| || ||||| |||||| ||| | | |||||||| ||||||||||| || ||
Sbjct 5281 CTTTATCACATTAGCCAGGCGACAGATGAATTTGGCGCGCCGAAGTTCACGCAGGAAGGC 5340
Query 40217 TTACCAAAGCTTGAGATGCGCGGCCATGACGTCGAAGAGTTCGTCGGTGTGGTCAGGCGC 40276
| ||||| || || |||| ||||| || || |||||||| ||||||||||| | |||
Sbjct 5341 ATGCCAAAACTGAAGCTGCGTGGCCACGATGTGGAAGAGTTTGTCGGTGTGGTTCGCCGC 5400
Query 40277 TATGGGGCAAGCCCAGACGTTCAGCTACTGGTCGACGCTGCAAACAAACCTGCCGAAGTC 40336
|| || || |||| || || ||| | || | || || || || | || || || ||
Sbjct 5401 TACGGTGCGAGCCGTGAAGTGCAGGAAATGATTGATGCGGCGAATCAGCCAGCGGAGGTT 5460
Query 40337 GGCAAACTCAATATTTCAAGGGCTTGCGGAACCTGTCTTCTCAAGCTGGCCTGAGGATAG 40396
| | ||| ||||| | || |||||||| || || | || ||||| ||| | |
Sbjct 5461 GCTCATCTCGATATTGCCAGAGCTTGCGGGACTTGCATGCTGCGACTGGCTTGAAACTGG 5520
Query 40397 ACAGCAATAGACGGAACCCTACCCTATGGCAGCCCTGAGCAGCGAGGTGAAGGCCTTCAT 40456
|| | | |||| ||| | |||||| || | | || ||||| ||||||||
Sbjct 5521 ACTGTATAAGAC-GAATGGTGATTTATGGCTGCATTAAAACCTGATGTGAAAGCCTTCAT 5579
Query 40457 CGTTCAGGCTCTTGCCTGCTTCGATACACCCTCACAGGTGGCAGAGGCCGTCAAGCGAGA 40516
||||||| ||||| |||| || || || || || |||| ||| | ||| | |||
Sbjct 5580 CGTTCAGTTGCTTGCGTGCTATGACACGCCATCGCAAGTGGTCGAGACTGTCCAAAAAGA 5639
Query 40517 ATTCAACATCGAGGTGAGCCGTCAGCAGGTGGAGTCACACGACCCCACCAAGCGATGCAG 40576
||| |||| || | | ||| ||||||| || || ||||| || |||||| || |
Sbjct 5640 GTTCGGCATCAAGATCACCCGGCAGCAGGCCGAATCGCACGATCCGACCAAGGCCAGCGG 5699
Query 40577 TAAAACCCTGGCCAAGCGTTGGGTGGACATGTTCCACGACGCGCGAGAGAGGTTCCGCCA 40636
||| || || || ||| ||| | || |||||||||| ||||||| | ||||
Sbjct 5700 TAAGACGCTCGCGAAGAAGTGGATCGAGATGTTCCACGCGACGCGAGAACGCTTCCTGAC 5759
Query 40637 CCAGGCGATTGACATACCCATCGCCAAC 40664
| | | | ||||| || |||||||||
Sbjct 5760 CGAAACCAGCGACATTCCGATCGCCAAC 5787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163248781195096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |