Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq9686 300 5e-77 >seq9686 Length=37809 Score = 300 bits (332), Expect = 5e-77 Identities = 516/748 (69%), Gaps = 1/748 (0%) Strand=Plus/Plus Query 39917 CATTTGATCGATGCTGACATCTGCATCATGTGGGCCTCATCTGCCTTCACGAAGCAAGGT 39976 ||||| | || || || | ||| || | ||||| || || ||| |||| |||| Sbjct 5041 CATTTACTTGAAGCGGATCTGTGCTTCCTCTGGGCGTCGAACGCTTTCGAGAAGAAAGGG 5100 Query 39977 CGCACAGTGCTGGGCCAAGCCGAACAGGTTGCGTTCCGTGCCGGTGGTTGGCAGAAGGCC 40036 || | || || || || || ||| | |||||| | || || ||||| |||||||| || Sbjct 5101 CGTTCCGTTCTTGGGCAGGCGGAAGAAGTTGCGATGCGGGCAGGTGGATGGCAGAAAGCG 5160 Query 40037 CGGATGGAGCAGCAGATGCGTGACTGGTTCGGCTGCGTACCGAGCTACATCATCACCCTG 40096 || ||||||||||| ||| || ||||||||| | || ||| | ||||||||| ||| Sbjct 5161 CGCATGGAGCAGCAAATGTACGAATGGTTCGGCAGGGTGCCGCAGTTCATCATCACGCTG 5220 Query 40097 GCTGCCGATTACTGCTCACAGTGCAGCGATGCGGACTTCTGTGCACTGGTCGAGCATGAG 40156 || || |||||||| || || || |||| ||| ||||| || ||| | ||||| ||| Sbjct 5221 GCAGCAGATTACTGTTCGCAATGTTCCGATCTGGAGTTCTGCGCCCTGTTAGAGCACGAG 5280 Query 40157 CTCTACCACATCGCCCAGGCAGTCGATCAGTACGGCGCGCCCAAGTTCACGCAAGACGGA 40216 || || ||||| |||||| ||| | | |||||||| ||||||||||| || || Sbjct 5281 CTTTATCACATTAGCCAGGCGACAGATGAATTTGGCGCGCCGAAGTTCACGCAGGAAGGC 5340 Query 40217 TTACCAAAGCTTGAGATGCGCGGCCATGACGTCGAAGAGTTCGTCGGTGTGGTCAGGCGC 40276 | ||||| || || |||| ||||| || || |||||||| ||||||||||| | ||| Sbjct 5341 ATGCCAAAACTGAAGCTGCGTGGCCACGATGTGGAAGAGTTTGTCGGTGTGGTTCGCCGC 5400 Query 40277 TATGGGGCAAGCCCAGACGTTCAGCTACTGGTCGACGCTGCAAACAAACCTGCCGAAGTC 40336 || || || |||| || || ||| | || | || || || || | || || || || Sbjct 5401 TACGGTGCGAGCCGTGAAGTGCAGGAAATGATTGATGCGGCGAATCAGCCAGCGGAGGTT 5460 Query 40337 GGCAAACTCAATATTTCAAGGGCTTGCGGAACCTGTCTTCTCAAGCTGGCCTGAGGATAG 40396 | | ||| ||||| | || |||||||| || || | || ||||| ||| | | Sbjct 5461 GCTCATCTCGATATTGCCAGAGCTTGCGGGACTTGCATGCTGCGACTGGCTTGAAACTGG 5520 Query 40397 ACAGCAATAGACGGAACCCTACCCTATGGCAGCCCTGAGCAGCGAGGTGAAGGCCTTCAT 40456 || | | |||| ||| | |||||| || | | || ||||| |||||||| Sbjct 5521 ACTGTATAAGAC-GAATGGTGATTTATGGCTGCATTAAAACCTGATGTGAAAGCCTTCAT 5579 Query 40457 CGTTCAGGCTCTTGCCTGCTTCGATACACCCTCACAGGTGGCAGAGGCCGTCAAGCGAGA 40516 ||||||| ||||| |||| || || || || || |||| ||| | ||| | ||| Sbjct 5580 CGTTCAGTTGCTTGCGTGCTATGACACGCCATCGCAAGTGGTCGAGACTGTCCAAAAAGA 5639 Query 40517 ATTCAACATCGAGGTGAGCCGTCAGCAGGTGGAGTCACACGACCCCACCAAGCGATGCAG 40576 ||| |||| || | | ||| ||||||| || || ||||| || |||||| || | Sbjct 5640 GTTCGGCATCAAGATCACCCGGCAGCAGGCCGAATCGCACGATCCGACCAAGGCCAGCGG 5699 Query 40577 TAAAACCCTGGCCAAGCGTTGGGTGGACATGTTCCACGACGCGCGAGAGAGGTTCCGCCA 40636 ||| || || || ||| ||| | || |||||||||| ||||||| | |||| Sbjct 5700 TAAGACGCTCGCGAAGAAGTGGATCGAGATGTTCCACGCGACGCGAGAACGCTTCCTGAC 5759 Query 40637 CCAGGCGATTGACATACCCATCGCCAAC 40664 | | | | ||||| || ||||||||| Sbjct 5760 CGAAACCAGCGACATTCCGATCGCCAAC 5787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163248781195096