Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6222 122 8e-23 >seq6222 Length=12937 Score = 122 bits (134), Expect = 8e-23 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | |||||| ||||| || ||||||||||| || || |||| ||| || | Sbjct 4443 AAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGT--ACGACCGTCTTCCA 4500 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | |||||||| ||| | ||||| || || ||||| || || |||||||| ||||| || Sbjct 4501 GTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGA 4560 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| |||| | |||| ||||| | ||||| || || | |||| |||||||| Sbjct 4561 TCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTTTTGC 4620 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| ||| || ||||| || ||||| Sbjct 4621 CGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 116 bits (128), Expect = 4e-21 Identities = 154/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | |||||| ||||| || ||||||||||| | || |||| ||| || | Sbjct 4215 AAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGT--ACGACCGTCTTCCA 4272 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||| ||||| ||| | || | || || || ||||| || |||||||| ||||| || Sbjct 4273 ACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGA 4332 Query 133573 TCTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 | ||| |||| || | |||| ||||| | |||||| || || | |||| ||||||| Sbjct 4333 T-TTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTG 4391 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || |||||||||||||| Sbjct 4392 CCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| || ||||| ||| || ||| ||| | || || | ||||||||| Sbjct 3996 GTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCA-TCTTCTAACTGCTTGCC 4054 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || || || |||||||| |||||||||||||| ||| || ||| Sbjct 4055 GGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCCTT 4114 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | || || || || | |||| || ||||| || || || Sbjct 4115 GACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTCTTGCCAGTGAGGGT 4174 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||| ||||||||||| Sbjct 4175 TTTTACAAAAATCTGCAT 4192 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| ||||| || ||| || || ||| | || || | Sbjct 3759 AAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCA-TCTTCCAA 3817 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || | || ||||| |||||||| || ||||||||||| ||| Sbjct 3818 TTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTC-TTGAA 3876 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | |||| ||||||| || || || || | ||||| |||||||| Sbjct 3877 TTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTTGC 3936 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||||| ||||| || ||||| Sbjct 3937 CCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483054433503960