Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6222 129 1e-24 >seq6222 Length=12937 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || ||||||||||||||||| ||| || ||| Sbjct 4189 CAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCAGAC 4130 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||| ||| || || ||| Sbjct 4129 ACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAACAA 4070 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || ||||| |||||||| |||||||| | |||||| |||| |||||| || Sbjct 4069 CGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAACATC 4010 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| ||||||||||| || || Sbjct 4009 CAGAAAGAATCTACTCTTCATCTAGT 3984 Score = 114 bits (126), Expect = 3e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| |||||||||||||| || |||||||| | ||| || ||||| Sbjct 4624 ACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCTGACACCATTGAAAACGTCAAAGCC 4565 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| |||||||| ||| || ||| ||| | || ||||||||||| || Sbjct 4564 AA-GATCCAAGACAAAGAAGGCATTCCCCCTGACCAACAACGTCTCATCTTCGCCGGCAA 4506 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||||| || | || ||| | |||||||| |||| ||||| || || ||||| Sbjct 4505 GCAACTGGAAGACGGTCGTACCTTGTCTGATTACAATATCCAAAAAGAATCCACCCTTCA 4446 Query 206373 CCTTGTTTTG 206382 | | ||| || Sbjct 4445 CTTGGTTCTG 4436 Score = 107 bits (118), Expect = 5e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| |||||||||||||| || |||||||| | ||| Sbjct 4405 AAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCTGACACCATTGAAAAC 4346 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| ||| || || ||| || | ||||| Sbjct 4345 GTCAAAGCCAAA-ATCCAAGACAAAGAAGGCATTCCCCCCGATCAACAACGATTAATCTT 4287 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || ||||||||||| || | || || | |||||||| |||| ||||| || Sbjct 4286 CGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAATATCCAAAAAGAATC 4227 Query 206364 TACTCTTCACCTTGTT 206379 || |||||| | ||| Sbjct 4226 CACCCTTCACTTGGTT 4211 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||| ||| || ||||| | ||| Sbjct 3949 AAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCCGACACCATTGAAAAC 3890 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || ||||| ||| || || ||| | | ||||| Sbjct 3889 GTCAAAGCCAAA-ATTCAAGACAAGGAAGGTATTCCTCCCGATCAGCAACGTTTGATCTT 3831 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||| ||||||||||| | || ||| |||| || || ||||||| || || Sbjct 3830 CGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAATATCCAGAAGGAATC 3771 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || | || ||| | || || Sbjct 3770 AACTCTCCATTTGGTCTTGCGTCTCCG 3744 Score = 105 bits (116), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-AT 206242 |||||| ||||| ||||| ||||||||||||||||| ||| ||| ||||| | || | Sbjct 4862 CAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCCGACACTATTGAGAA 4803 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | ||||| ||| |||||||| |||||||| ||| || || ||| | | || | Sbjct 4802 CGTCAAAGCCAAA-ATTCAAGATAAAGAAGGCATTCCTCCTGATCAACAACGTTTAATTT 4744 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 ||||||| || || |||||||| || | || || | || |||||| | || || || | Sbjct 4743 TCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAACATTCAAAAGGAAT 4684 Query 206363 CTACTCTTCA 206372 |||| || || Sbjct 4683 CTACACTCCA 4674 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 || ||| | |||||| || || ||||| |||| ||| || |||| ||| || | || || Sbjct 4436 CAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTC 4495 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| ||||| ||||||||||| || |||||||| Sbjct 4496 TTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTG 4531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180902750892309