Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_025434.1
Length=62699
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 562 1e-155
seq9686 291 3e-74
>seq4723
Length=43540
Score = 562 bits (622), Expect = 1e-155
Identities = 618/826 (75%), Gaps = 15/826 (2%)
Strand=Plus/Minus
Query 1782 CCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGATGAA 1841
|||||| |||||| || || | |||||||| || || || ||||| || ||||||||
Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220
Query 1842 CTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGACATA 1901
||||||||||||||||||||| ||||||||||||| || || || ||||||| |||||
Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160
Query 1902 ATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTTTTCG 1961
|| | |||||| || |||||||| ||||| || ||||| ||| ||||||| | ||||
Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100
Query 1962 AGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGAAACC 2021
|| | |||||||||| | || |||||||||||||| || || || |||||||| || ||
Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040
Query 2022 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGCCGTT 2081
|| |||| |||||||||||| || |||||||| || || || ||||| || |||||
Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980
Query 2082 GCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATAGAT 2141
| ||| |||||| | || || ||||||||||| || |||||| | |||||||| |||
Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920
Query 2142 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 2201
|||||| || || | || | ||||||| || ||||| || |||| || ||||| |
Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860
Query 2202 CTCGTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCGTGCA 2261
||| | ||||| ||||||||||| | ||||||||||||||||| | || || |||||
Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800
Query 2262 GACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTCCGGA 2321
||| || |||||||||||||||||||| |||||||||||||| | ||| ||||| |||||
Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740
Query 2322 GCGGGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGCCCCCGAGCCGTAATTT 2381
||| ||||||| || |||||| ||||| || || || || | ||||| || | |
Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680
Query 2382 TTGCCATGCATAATCTCCCTGCTCGACACCTCTCACGTCGATCCCGGTACGTTGTAGGAT 2441
|||||| || | ||| || |||||||| | | ||||| || || || || |||||
Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620
Query 2442 AATTTCTGGTGTCATGCTGCCACCTTCTGCTCCGTGGCTTTCTGTTTCAGGAATCCAAGA 2501
|||||| ||||||||||||| ||| ||||| || ||||| || |||
Sbjct 1619 AATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAACCCGAGA 1575
Query 2502 ACCTTCTCTGCTTCGGCCTGGGACAGTTCTGACGACGCTCGAATGTAGCGGCGAAATATC 2561
| || | |||||| |||| || || || || ||||| ||| || || ||
Sbjct 1574 GCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACGGAAGATT 1515
Query 2562 TGGGAACAGAGCGGCAAGAGGTCGTCGTCCCACGTTTTTTCCATGG 2607
| || |||||||| | ||||| | ||||| || || | |||||
Sbjct 1514 TTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGG 1469
Score = 289 bits (320), Expect = 1e-73
Identities = 355/486 (73%), Gaps = 9/486 (2%)
Strand=Plus/Minus
Query 8491 CTAAAGCAGAACTGAATACCAGAAAACTTTTCCGATAATCTCCACGCTTTGAGTATCTGC 8550
||| ||||| || || ||||| ||||| || |||| ||| || ||| ||
Sbjct 40542 CTACAGCAGGACCGAGTACCAAAAAACGCGGCCAATAACCTCGAC---------ATCCGC 40492
Query 8551 TTCTTCGTCAGGGTACTCTTCACTGTTATAACTGCGTATGATTAGTTTTCCACCGGGGCG 8610
|| | | | | | ||||| | |||| | |||||||| | || |||| |||||
Sbjct 40491 CTCGTTGGCTGTCTCATCTTCTCGGTTAAAGCTGCGTATAGTCAGCATTCCTCCGGGATT 40432
Query 8611 TCTGTACAATAGCTTTATACGCTTCAGTTTTTCATCACCGACACCAGGCTGTGCGATGGC 8670
| || | ||||||| ||||| || || || |||||| | || || || ||||| ||
Sbjct 40431 ACGATATAGCTGCTTTATGCGCTTAAGCTTATCGTCACCGCCGCCCGGTTGGGCGATCGC 40372
Query 8671 GTAGAGTTTGCCGTCAACAATACGTTTGTTGTTTGTGTCTACTGCGATTGTTGTTCCATC 8730
|| || || || ||||| || |||||||| || |||||||| || | || ||||| ||
Sbjct 40371 ATAAAGCTTCCCATCAACTATTCGTTTGTTATTCGTGTCTACCGCAACGGTGGTTCCGTC 40312
Query 8731 TGGTATCACGGGTTCCATGCTATCACCAGTAGCCGGAAAACAAAGCACACCAGAACCATC 8790
|||||||| ||||||||||||||||| ||||| || ||||| || || |||||||||||
Sbjct 40311 AGGTATCACCGGTTCCATGCTATCACCGGTAGCGGGGAAACAGAGGACTCCAGAACCATC 40252
Query 8791 ACTGTTAGCTCCGACACGGCGCAAGGTTGCTTTTGAGAAGCGTAATTTAAAACCATTATG 8850
||| || || ||||| || |||| ||| || |||||||| | |||||||| || || ||
Sbjct 40251 ACTATTTGCACCGACGCGTCGCAGGGTAGCCTTTGAGAACCTCAATTTAAATCCGTTGTG 40192
Query 8851 ATCTTCGCAATGAACTCTTCCGTCACCGCATGCAAACTCAATGTCTTTCAGATATGGCAC 8910
|||||||| ||| || | || || ||||| |||||||| || || || || | |||||
Sbjct 40191 ATCTTCGCTATGGACACGGCCATCCCCGCACGCAAACTCGATATCCTTAAGGAACGGCAC 40132
Query 8911 CTCAACTTCATCATCTCGTAGTGGTGTATTTCTGTCCCAAGTTTCAAGGGAACCCCATTC 8970
|| || ||||||||| |||| || || || | ||||| | |||| | ||||||||
Sbjct 40131 TTCGACCTCATCATCTGGTAGGGGCGTGTTCTTATCCCATGCGTCAACAGTCCCCCATTC 40072
Query 8971 TGATTC 8976
||||||
Sbjct 40071 TGATTC 40066
>seq9686
Length=37809
Score = 291 bits (322), Expect = 3e-74
Identities = 280/359 (78%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 19223 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGTGCATGGGCGGCAAATAACTATGAG 19282
||||| || |||| ||||| | || |||||||| || ||||| || ||||| ||||
Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218
Query 19283 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 19342
|||||| | ||| |||| ||||| || |||||||| ||||| | || | | ||||||
Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278
Query 19343 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 19402
|| || |||||||||||||| ||||| |||||| | | |||||||| || || | ||
Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338
Query 19403 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACA 19462
|||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| |||
Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398
Query 19463 TTCATGGCGCTGGCACGTAAGCATGGATGCTCTGATGGAACTATCGGTAAAAAATTACAG 19522
|| ||||||||||| || |||||||| ||||| ||||| |||||||||||| |||||
Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458
Query 19523 AAAGCGGAGGGTGTGGTTGAAGGGATGTTAATGTTACTTGGTGTCAGACTGGAAATGGA 19581
||||| ||||| || |||||||| ||| | ||| | || | |||| ||||||| |||||
Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGA 517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 200363838487540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |